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Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
2
gene expression
Annotation Category
2
Gene expression levels
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
1
RNA-seq
1
snRNA-seq
Available data
bed bed3+
2
bed bed9
2
bigWig
1
tsv
File set status
4
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
primary cell
Biosample term
24
heart
23
kidney
20
stomach
19
brain
18
A549
17
epithelial cell of proximal tubule
17
lung
17
monocyte
16
glomerular endothelial cell
16
induced pluripotent stem cell
16
islet of Langerhans
16
muscle of arm
15
adrenal gland
15
hepatocyte
15
muscle of leg
15
small intestine
14
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
12
neural progenitor cell
11
EndoC_BH1
11
cardiomyocytes
11
hematopoietic multipotent progenitor cell
11
right kidney
11
right lung
11
thymus
10
B cell
10
T-helper 1 cell
10
T-helper 17 cell
10
endothelial cell
10
liver
10
pancreatic ductal cell
10
regulatory T cell
9
CD4-positive, alpha-beta memory T cell
9
H1-hESC
9
adipose tissue
9
body of pancreas
9
extended pluripotent stem (EPS) cells
9
heart left ventricle
9
left kidney
9
progenitor cell of endocrine pancreas
9
renal cortex interstitium
9
renal pelvis
9
subcutaneous adipose tissue
9
tibial nerve
8
caudate nucleus
7
CD8-positive, alpha-beta memory T cell
7
ascending aorta
7
cerebellum
7
coronary artery
7
embryonic stem cell
7
frontal cortex
7
kidney loop of Henle thin ascending limb epithelial cell
7
mature neutrophil
7
omental fat pad
7
pancreatic acinar cell
7
right atrium auricular region
7
spinal cord
7
spleen
7
tibial artery
6
K562
6
T-helper 2 cell
6
glomerular visceral epithelial cell
6
heart right ventricle
6
kidney interstitial cell
6
mononuclear cell
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic delta cell
6
putamen
6
substantia nigra
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Ammon's horn
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
MCF-7
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
alternatively activated macrophage
5
aorta
5
endothelial cell of umbilical vein
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mesangial cell
5
natural killer cell
5
ovary
5
pancreatic stellate cell
5
right lobe of liver
5
sigmoid colon
5
temporal lobe
5
trophoblast cell
4
C1 segment of cervical spinal cord
4
CD14-positive monocyte
4
CD8-positive, alpha-beta T cell
4
T cell
4
adipocyte
4
amygdala
4
angular gyrus
4
anterior cingulate cortex
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
cerebellum (Hemisphere)
4
chorionic villus
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
foreskin keratinocyte
4
gamma-delta T cell
4
gastrocnemius medialis
4
gastrocnemius medialis(Muscle - Skeletal)
4
hypothalamus
4
inflammatory macrophage
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
left ventricle myocardium
4
mesenchymal stem cell
4
muscle of trunk
4
nephron progenitor
4
neutrophil
4
nucleus accumbens
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
psoas muscle
4
retina
4
right cardiac atrium
4
skeletal muscle myoblast
4
skeletal muscle satellite cell
4
skeletal muscle tissue
4
testis
4
thyroid gland
4
transverse colon
3
CD4-positive, alpha-beta T cell
3
Cycling Mononuclear Phagocyte
3
HeLa-S3
3
Mast Cell
3
Peyer's patch
3
S-shaped body
3
adult endothelial progenitor cell
3
central memory CD8-positive, alpha-beta T cell
3
chorion membrane
3
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
3
effector memory CD8-positive, alpha-beta T cell
Organ
4
connective tissue
Life stage
2
adult
1
unknown
Date released
2
September, 2022
1
February, 2021
1
February, 2024
Software used
2
chromhmm
2
r
1
deeptools
1
samtools
1
umitools
Lab
3
AMP-T2D consortium
1
Stephen Parker, UMich
Project
4
AMP
RFA
3
AMP
1
AMP2
annotation_type!
eQTL
files.file_type!
bed bed3+
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR148SNR
released
Annotation file set
: Chromatin states for BSS00039 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR379DHG
released
Annotation file set
: Chromatin states for BSS00038 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP