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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
chromatin state
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
32
islet of Langerhans
25
pancreatic ductal cell
23
body of pancreas
21
EndoC_BH1
21
pancreas
18
pancreatic acinar cell
18
pancreatic beta cell
17
pancreatic alpha cell
16
pancreatic delta cell
15
endocrine pancreas
10
pancreatic stellate cell
6
pancreatic polypeptide-secreting cell
5
Panc1
4
pancreatic A cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
type B pancreatic cell
3
8988T
3
HPDE6-E6E7
3
pancreatic quiescent stellate cell
2
pancreatic endocrine cell
1
activated pancreatic stellate cell
1
pancreatic D cell
1
pancreatic PP cell
1
quiescent pancreatic stellate cell
Disease term
3
pancreatic ductal adenocarcinoma
Organ
5
pancreas
Life stage
4
unknown
Date released
3
September, 2022
1
February, 2021
1
May, 2021
Software used
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
annotation_type!
eQTL
organ_slims!
pericardium
Showing 5 of 5 results
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Download
FileSet
DSR623CCG
released
Annotation file set
: Candidate regulatory elements for BSS01405 Panc1 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR898MBY
released
Annotation file set
: Target gene predictions for BSS01405 Panc1 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR991ZNU
released
Annotation file set
: Chromatin states for BSS01405 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR014CHT
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE Panc1
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR988OGT
released
Annotation file set
: enhancer-gene predicton of Panc1-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP