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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
6
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
stem cell
Biosample term
98
monocyte
82
heart
82
stomach
70
brain
67
lung
66
muscle of arm
64
HeLa-S3
64
kidney
62
small intestine
61
A549
60
adrenal gland
59
placenta
56
muscle of leg
55
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
47
thymus
45
H1-hESC
44
liver
44
right lung
43
CD8-positive, alpha-beta T cell
41
hematopoietic multipotent progenitor cell
41
right kidney
40
K562
39
renal cortex interstitium
38
renal pelvis
36
left kidney
34
B cell
34
neural progenitor cell
33
spinal cord
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
30
heart left ventricle
30
spleen
27
adipose tissue
27
islet of Langerhans
25
MCF-7
22
CD8-positive, alpha-beta memory T cell
22
body of pancreas
22
sigmoid colon
22
trophoblast cell
20
breast cancer cell
20
mononuclear cell
20
tibial nerve
19
HFFc6
19
caudate nucleus
19
psoas muscle
18
foreskin fibroblast
18
ovary
17
adipocyte
17
muscle of trunk
17
thyroid gland
17
transverse colon
16
H9
16
chorionic villus
16
coronary artery
16
fibroblast of lung
16
gastrocnemius medialis
16
heart right ventricle
16
layer of hippocampus
16
macrophage
16
natural killer cell
16
pancreas
16
retina
16
substantia nigra
15
GM12878
15
T cell
15
fibroblast
15
mesenchymal stem cell
15
neutrophil
15
regulatory T cell
15
skeletal muscle tissue
15
testis
15
upper lobe of left lung
14
CD4-positive, alpha-beta T cell
14
HepG2
14
cardiac muscle cell
14
endocrine pancreas
14
omental fat pad
14
right atrium auricular region
14
subcutaneous adipose tissue
14
tibial artery
13
ascending aorta
13
cerebellum
13
fibroblast of cardiac tissue
13
neurosphere
13
prostate gland
13
skeletal muscle myoblast
13
smooth muscle cell
12
Peyer's patch
12
T-helper 17 cell
12
aorta
12
fibroblast of dermis
12
neuroblastoma cell
12
putamen
11
T-helper 1 cell
11
T-helper 2 cell
11
lymphoblastoid cell line
11
temporal lobe
10
22Rv1
10
frontal cortex
10
gastric cancer cell
10
left renal cortex interstitium
10
lymphocyte
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
osteoblast
10
right renal cortex interstitium
9
Ammon's horn
9
Rhabdomyosarcoma
9
SK-N-SH
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
left cardiac atrium
9
left renal pelvis
9
liposarcoma
9
neuronal stem cell
9
parathyroid adenoma
9
pericyte cell
9
right renal pelvis
9
thoracic aorta
9
trophoblast
8
B-lymphoblastoid cell line
8
HEK293
8
IMR-90
8
cingulate gyrus
8
duodenal mucosa
8
embryonic stem cell
8
endodermal cell
8
esophagus muscularis mucosa
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
lower leg skin
8
naive T cell
8
pituitary stalk
8
tongue
8
vagina
7
GM06990
7
GM12864
7
GM12865
7
GM12875
7
GM19238
7
GM19239
7
GM19240
7
HAP-1
7
HL-60
7
HT-29
7
NAMALWA cell
7
SK-N-DZ
7
SK-N-MC
7
T47D
7
angular gyrus
7
astrocyte
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
eye
7
foreskin melanocyte
7
limb
7
mature neutrophil
7
mesendoderm
7
right lobe of liver
7
stomach smooth muscle
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM08714
6
GM12891
6
GM12892
6
GM23248
6
HCT116
6
Jurkat
6
KARPAS-422 cell
6
LNCaP clone FGC
6
LoVo cell
6
WERI-Rb-1
6
WI38
6
chorion membrane
6
fibroblast of breast
6
fibroblast of mammary gland
6
fibroblast of pulmonary artery
6
hESC cell
6
hepatic stellate cell
6
iPSC derived cell line
6
induced pluripotent stem cell
6
mesodermal cell
6
mucosa of rectum
6
neuroblastoma cell line
6
skeletal muscle satellite cell
6
skin fibroblast
6
uterus
Life stage
4
embryonic
Date released
3
February, 2021
3
September, 2022
1
March, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
annotation_type!
gene expression
accessible chromatin
organ_slims!
epithelium
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP