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Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
gene expression
1
target gene predictions
Annotation Category
6
cis-regulatory elements
1
Target gene links
Annotation type Category
ChIP-seq
6
ATAC-seq
1
pCHi-C
Available data
6
bed bed3+
File set status
7
released
Genome assembly (visualization)
6
hg19
Organism
7
Homo sapiens
Biosample type
7
in vitro differentiated cells
Biosample term
52
HeLa-S3
39
H1-hESC
28
endothelial cell
28
fibroblast
28
islet of Langerhans
28
macrophage
27
monocyte
25
retina
20
pigmented layer of retina
19
HFFc6
19
pericyte cell
19
smooth muscle cell
18
K562
16
liver
15
CD14-positive monocyte
15
pancreatic beta cell
15
pancreatic ductal cell
14
pancreatic acinar cell
14
pancreatic alpha cell
13
EndoC_BH1
13
excitatory neuron
13
pancreatic delta cell
13
subcutaneous adipose tissue
12
coronary artery
12
hepatocyte
12
kidney
11
T cell
11
adipocyte
11
astrocyte
11
neural progenitor cell
10
B cell
10
CD8-positive, alpha-beta T cell
10
pancreas
10
pituitary stalk
10
right atrium auricular region
10
tibial artery
10
tibial nerve
9
adipose tissue
9
putamen
9
retinal pigment epithelial cell
8
GM12878
8
caudate nucleus
8
frontal cortex
8
glutamatergic neuron
8
heart
8
heart left ventricle
8
induced pluripotent stem cell
8
pancreatic stellate cell
8
regulatory T cell
7
Ammon's horn
7
H9
7
embryonic stem cell
7
erythroblast
7
lymphoblastoid cell line
7
mesenchymal stem cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
natural killer cell
7
omental fat pad
7
skeletal muscle fiber
7
type II pneumocyte
6
CD4-positive helper T cell
6
SGBS preadipocytes
6
ascending aorta
6
body of pancreas
6
cerebellum
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dendritic cell
6
endothelial cell of hepatic sinusoid
6
enterocyte
6
iPSC derived cell line
6
keratinocyte
6
lymphocyte
6
memory B cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
olfactory receptor cell
6
osteoblast
6
skeletal muscle satellite cell
6
stomach
6
substantia nigra
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
HUES8
5
adrenal gland
5
amygdala
5
anterior cingulate cortex
5
basal cell
5
brain
5
cardiac muscle cell
5
cerebellum (Hemisphere)
5
chondrocyte
5
endothelial cell of umbilical vein
5
fibroblast of cardiac tissue
5
gabaergic neuron
5
hypothalamus
5
inhibitory neuron
5
naive B cell
5
neutrophil
5
nucleus accumbens
5
psoas muscle
spleen
4
C1 segment of cervical spinal cord
4
CD4-positive, alpha-beta T cell
4
CyT49
4
HepG2
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
T-helper 1 cell
4
activated CD4-positive, alpha-beta T cell
4
blood vessel smooth muscle cell
4
cardiomyocytes (cardiac muscle cell)
4
cartilage tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
gastrocnemius medialis(Muscle - Skeletal)
4
glomerular visceral epithelial cell
4
heart right ventricle
4
hepatic stellate cell
4
left ventricle myocardium
4
luminal epithelial cell of mammary gland
4
mammary gland epithelial cell
4
megakaryocyte
4
mesothelial cell
4
myofibroblast cell
4
ovary
4
pancreatic A cell
4
pancreatic endothelial cell
4
pancreatic polypeptide-secreting cell
4
right lobe of liver
4
skeletal muscle myoblast
4
skin fibroblast
4
small intestine
4
smooth muscle cell of the esophagus
4
spinal cord
4
thymus
4
type B pancreatic cell
4
type I pneumocyte
3
Jurkat
3
Schwann cell
3
T follicular helper cell
3
T-helper 17 cell
3
T-helper 2 cell
3
U937
3
activated CD8-positive, alpha-beta T cell
3
blood cell
3
brain pericyte
3
choroid plexus epithelial cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
globus pallidus
3
glomerular endothelial cell
3
goblet cell
3
kidney glomerular epithelial cell
3
mast cell
3
medulla oblongata
3
mesendoderm
3
microglial cell
3
midbrain
3
muscle of leg
3
naive t cell
3
occipital lobe
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic MUC5B+ductal cell
3
pancreatic alpha+beta cell
3
pancreatic cycling alpha cell
3
pancreatic gamma+epsilon cell
3
pancreatic macrophage cell
3
pancreatic mast cell
3
pancreatic quiescent stellate cell
3
parietal cell
3
peptic cell
3
placenta
3
plasma cell
3
plasmacytoid dendritic cell
3
pons
3
renal cortical epithelial cell
3
renal pelvis
3
schwann cell
3
sigmoid colon
3
skin of body
3
smooth muscle cell of the coronary artery
3
superior temporal gyrus
3
thyroid follicular cell
3
thyroid gland
3
transverse colon
3
trophoblast cell
3
uterus
2
hindlimb muscle
2
muscle of leg
2
A549
2
Adaptive / Maladaptive / Repairing Fibroblast
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Afferent / Efferent Arteriole Endothelial Cell
2
B Cell
Date released
5
May, 2021
1
March, 2020
1
November, 2022
Software used
6
macs
1
nospecificsoft_customcode
Lab
6
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Project
7
AMP
RFA
6
AMP
1
AMP2
annotation_type!
gene expression
biosample_term_name!
spleen
annotation_type_category!
ChIP-seq
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR455VRI
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Embryonic Stem Cell).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR995THT
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Late pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR305VKL
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Early pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR323EMN
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Gut tube cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838FNO
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Embyonic stem cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661PJZ
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Definitive endoderm cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR929DUM
released
Annotation file set
: A target gene prediction annotation in Human Human ES Cells of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP