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Schema
Citing CMDGA
Clear Filters
Annotation type
1
binding sites
1
chromatin state
1
histone modifications
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
6
ChIP-seq
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
stem cell
Biosample term
113
monocyte
55
HeLa-S3
42
H1-hESC
38
CD8-positive, alpha-beta T cell
35
neural progenitor cell
33
islet of Langerhans
32
fibroblast
31
endothelial cell
27
kidney
27
macrophage
27
retina
26
K562
26
liver
25
heart
24
brain
21
A549
21
stomach
20
breast cancer cell
20
pericyte cell
20
pigmented layer of retina
20
smooth muscle cell
19
HFFc6
18
lung
18
placenta
17
B cell
17
embryonic stem cell
17
pancreatic ductal cell
17
small intestine
15
EndoC_BH1
15
T cell
15
adipose tissue
15
adrenal gland
15
keratinocyte
15
muscle of arm
15
muscle of leg
15
pancreatic beta cell
14
adipocyte
14
hepatocyte
14
subcutaneous adipose tissue
14
thymus
13
heart left ventricle
13
large intestine
13
muscle of back
13
pancreatic alpha cell
12
HepG2
12
common myeloid progenitor, CD34-positive
12
excitatory neuron
12
left lung
12
neuroblastoma cell
12
pancreatic acinar cell
12
pancreatic delta cell
11
GM12878
11
astrocyte
11
coronary artery
11
endothelial cell of hepatic sinusoid
11
hematopoietic multipotent progenitor cell
11
lymphoblastoid cell line
10
MCF-7
10
gastric cancer cell
10
regulatory T cell
10
right lung
10
spinal cord
10
tibial nerve
9
CD4-positive, alpha-beta memory T cell
9
Rhabdomyosarcoma
9
diffuse intrinsic pontine glioma
9
erythroblast
9
liposarcoma
9
mesenchymal stem cell
9
retinal pigment epithelial cell
9
tibial artery
8
B-lymphoblastoid cell line
8
caudate nucleus
8
fibroblast cell line
8
neutrophil
8
renal pelvis
8
right atrium auricular region
8
right kidney
8
skeletal muscle satellite cell
8
spleen
8
substantia nigra
7
CD4-positive, alpha-beta T cell
7
CD8-positive, alpha-beta memory T cell
7
H9
7
T-cell acute lymphoblastic leukemia
7
cardiac muscle cell
7
endothelial cell of umbilical vein
7
esophageal adenocarcinoma
7
fibroblast of cardiac tissue
7
left kidney
7
lymphocyte
7
mammary gland epithelial cell
7
mature neutrophil
7
natural killer cell
7
omental fat pad
7
pancreas
7
putamen
6
Ammon's horn
6
Chondroid Chordoma
6
ascending aorta
6
body of pancreas
6
cerebellum
6
chondrocyte
6
colon epithelial cell
6
hESC cell
6
iPSC derived cell line
6
induced pluripotent stem cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
neuroblastoma cell line
6
osteoblast
6
pancreatic stellate cell
6
renal cortex interstitium
5
CD14-positive, CD16-negative classical monocyte
5
CyT49
5
Ewing sarcoma
5
GM19238
5
GM19239
5
GM19240
5
HUES8
5
SGBS preadipocytes
5
amygdala
5
aorta
5
enterocyte
5
foreskin fibroblast
5
frontal cortex
5
glutamatergic neuron
5
mammary epithelial cell
5
osteosarcoma
5
prostate cancer cell line
5
prostate gland
5
psoas muscle
5
skeletal muscle fiber
5
skeletal muscle tissue
5
temporal lobe
5
type I muscle cell
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
BE(2)-C
4
BJ cell
4
C1 segment of cervical spinal cord
4
CD14-positive monocyte
4
CD4-positive helper T cell
4
Caco-2 cell
4
GM06990
4
GM12864
4
GM12865
4
GM12875
4
GM12891
4
GM12892
4
GM18505
4
GM19099
4
GM19193
4
HEK293
4
HL-60
4
HS-SY-2 cell
4
IMR-90
4
Jurkat
4
KARPAS-422 cell
4
Mantle cell lymphoma
4
NAMALWA cell
4
Rh-4 cell
4
SK-N-MC
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
anterior cingulate cortex
4
aortic endothelial cell
4
bronchial epithelial cell
4
cartilage tissue
4
choroid plexus epithelial cell
4
cortical cell of adrenal gland
4
diffuse large B-cell lymphoma
4
endodermal cell
4
epithelial cell of prostate
4
esophageal squamous cell carcinoma
4
fibroblast of lung
4
fibroblast of villous mesenchyme
4
foreskin keratinocyte
4
heart right ventricle
4
hypothalamus
4
layer of hippocampus
4
left cardiac atrium
4
mast cell
4
memory B cell
4
mononuclear cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
neuronal stem cell
4
nucleus accumbens
4
plasma cell
4
right lobe of liver
4
skeletal muscle myoblast
4
smooth muscle cell of the coronary artery
4
squamous cell lung carcinoma
4
synovial sarcoma cell
4
tracheal epithelial cell
4
triple-negative breast cancer
Life stage
1
embryonic
Date released
2
February, 2021
1
March, 2020
1
September, 2022
Software used
2
macs
1
chromhmm
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type!
gene expression
annotation_type_category!
DNase-seq
Showing 4 of 4 results
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Download
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP