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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
6
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
8
in vitro differentiated cells
Biosample term
116
monocyte
87
heart
85
stomach
74
kidney
72
brain
67
muscle of arm
66
lung
64
HeLa-S3
62
A549
62
small intestine
60
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
48
CD8-positive, alpha-beta T cell
47
liver
47
thymus
46
H1-hESC
45
right lung
43
neural progenitor cell
42
B cell
42
hematopoietic multipotent progenitor cell
42
right kidney
41
K562
40
renal cortex interstitium
40
renal pelvis
39
retina
36
left kidney
35
spinal cord
34
islet of Langerhans
32
CD4-positive, alpha-beta memory T cell
32
fibroblast
32
heart left ventricle
32
spleen
31
CD14-positive monocyte
31
endothelial cell
30
macrophage
28
adipose tissue
26
MCF-7
24
adipocyte
24
hepatocyte
23
smooth muscle cell
23
tibial nerve
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
body of pancreas
22
foreskin keratinocyte
22
pericyte cell
22
sigmoid colon
21
caudate nucleus
21
keratinocyte
21
natural killer cell
21
regulatory T cell
20
breast cancer cell
20
mononuclear cell
20
pancreas
20
pigmented layer of retina
19
coronary artery
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
pancreatic ductal cell
19
psoas muscle
18
HFFc6
18
gastrocnemius medialis
18
ovary
18
thyroid gland
18
transverse colon
17
HepG2
17
cardiac muscle cell
17
heart right ventricle
17
muscle of trunk
17
right atrium auricular region
17
tibial artery
16
chorionic villus
16
embryonic stem cell
16
fibroblast of cardiac tissue
16
fibroblast of lung
16
layer of hippocampus
16
mesenchymal stem cell
16
retinal pigment epithelial cell
16
subcutaneous adipose tissue
16
substantia nigra
16
testis
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
EndoC_BH1
15
GM12878
15
T-helper 1 cell
15
astrocyte
15
mammary gland epithelial cell
15
neutrophil
15
omental fat pad
15
pancreatic beta cell
15
skeletal muscle myoblast
15
skeletal muscle tissue
14
H9
14
T-helper 17 cell
14
T-helper 2 cell
14
ascending aorta
14
endocrine pancreas
14
osteoblast
14
prostate gland
14
putamen
13
Peyer's patch
13
bronchial epithelial cell
13
cerebellum
13
neurosphere
13
pancreatic acinar cell
13
pancreatic alpha cell
12
excitatory neuron
12
fibroblast of dermis
12
frontal cortex
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
12
pancreatic delta cell
11
aorta
11
breast epithelium
11
endothelial cell of hepatic sinusoid
11
epithelial cell of prostate
11
erythroblast
11
left renal pelvis
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
right renal pelvis
11
skeletal muscle satellite cell
11
temporal lobe
10
22Rv1
10
Ammon's horn
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
left cardiac atrium
10
lymphocyte
10
neuronal stem cell
10
right renal cortex interstitium
10
skin fibroblast
10
thoracic aorta
9
SK-N-DZ
9
SK-N-SH
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
hepatic stellate cell
9
kidney tubule cell
9
liposarcoma
9
parathyroid adenoma
9
tongue
9
trophoblast
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
vagina
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
B-lymphoblastoid cell line
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CD4-positive helper T cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
esophagus
7
eye
7
fibroblast cell line
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
mature neutrophil
7
right lobe of liver
7
stomach smooth muscle
Life stage
4
embryonic
Date released
3
February, 2021
3
September, 2022
1
June, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
annotation_type!
gene expression
software_used.software.name!
nospecificsoft_customcode
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP