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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
54
common myeloid progenitor, CD34-positive
35
B cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
22
CD8-positive, alpha-beta memory T cell
19
foreskin keratinocyte
19
mononuclear cell
18
endothelial cell of umbilical vein
17
T cell
17
natural killer cell
16
fibroblast of lung
16
regulatory T cell
16
trophoblast cell
15
CD8-positive, alpha-beta T cell
15
T-helper 1 cell
15
macrophage
14
CD4-positive, alpha-beta T cell
14
T-helper 17 cell
14
T-helper 2 cell
13
fibroblast
13
neurosphere
13
neutrophil
13
pericyte cell
12
endothelial cell
12
fibroblast of dermis
12
keratinocyte
12
skeletal muscle myoblast
11
foreskin fibroblast
11
mammary gland epithelial cell
10
dermis blood vessel endothelial cell
10
fibroblast of cardiac tissue
10
monocyte
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
smooth muscle cell
9
epithelial cell of prostate
9
naive T cell
8
bronchial epithelial cell
8
fibroblast of breast
8
myoepithelial cell of mammary gland
8
pancreatic delta cell
7
astrocyte
7
hepatocyte
7
kidney tubule cell
7
mature neutrophil
7
pancreatic acinar cell
7
pancreatic alpha cell
7
pancreatic beta cell
7
pancreatic ductal cell
7
skin fibroblast
6
T-cell
6
cardiac muscle cell
6
choroid plexus epithelial cell
6
dermis lymphatic vessel endothelial cell
6
epithelial cell of esophagus
6
epithelial cell of proximal tubule
6
erythroblast
6
foreskin melanocyte
6
mammary epithelial cell
6
olfactory receptor cell
6
osteoblast
6
skeletal muscle satellite cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
alternatively activated macrophage
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
fibroblast of mammary gland
5
fibroblast of pulmonary artery
5
fibroblast of the aortic adventitia
5
fibroblast of villous mesenchyme
5
glomerular endothelial cell
5
kidney epithelial cell
5
kidney glomerular epithelial cell
5
luminal epithelial cell of mammary gland
5
lung microvascular endothelial cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
renal cortical epithelial cell
5
retinal pigment epithelial cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
4
CD1c-positive myeloid dendritic cell
4
astrocyte of the spinal cord
4
basal cell
4
brain microvascular endothelial cell
4
cardiac fibroblast
4
fibroblast of gingiva
4
fibroblast of peridontal ligament
4
fibroblast of the conjunctiva
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
inflammatory macrophage
4
iris pigment epithelial cell
4
kidney capillary endothelial cell
4
memory B cell
4
mesenchymal stem cell
4
myofibroblast cell
4
naive B cell
4
non-pigmented ciliary epithelial cell
4
pancreatic stellate cell
4
peripheral blood mononuclear cell
4
pulmonary artery endothelial cell
4
stromal cell of bone marrow
4
type II pneumocyte
3
T follicular helper cell
3
activated CD4-positive, alpha-beta T cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
blood cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
enterocyte
3
epidermal melanocyte
3
epithelial cell of amnion
3
mammary stem cell
3
pancreatic A cell
3
pancreatic MUC5B+ductal cell
3
pancreatic alpha+beta cell
3
pancreatic cycling alpha cell
3
pancreatic endothelial cell
3
pancreatic gamma+epsilon cell
3
pancreatic macrophage cell
3
pancreatic mast cell
3
pancreatic quiescent stellate cell
3
regular cardiac myocyte
3
type B pancreatic cell
3
type I muscle cell
3
type II muscle cell
2
cardiac fibroblast
2
Adaptive / Maladaptive / Repairing Fibroblast
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Afferent / Efferent Arteriole Endothelial Cell
2
B Cell
2
Classical Dendritic Cell
2
Connecting Tubule Cell
2
Connecting Tubule Intercalated Cell Type A
2
Connecting Tubule Principal Cell
2
Cortical Thick Ascending Limb Cell
2
Cycling Endothelial Cell
2
Cycling Epithelial Cell
2
Cycling T Cell
2
Cytotoxic T Cell
2
Degenerative Connecting Tubule Cell
2
Degenerative Connecting Tubule Cell / Principal Cell
2
Degenerative Cortical Thick Ascending Limb Cell
2
Degenerative Distal Convoluted Tubule Cell
2
Degenerative Intercalated Cell Type A
2
Degenerative Peritubular Capillary Endothelial Cell
2
Degenerative Principal Cell
2
Degenerative Proximal Tubule Epithelial Cell
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
2
Degenerative Vascular Smooth Muscle Cell
2
Descending Thin Limb Cell Type 1
2
Distal Convoluted Tubule Cell Type 1
2
Fibroblast
2
Glomerular Capillary Endothelial Cell
2
Intercalated Cell Type A
2
Intercalated Cell Type B
2
Lymphatic Endothelial Cell
2
M2 Macrophage
2
Medullary Thick Ascending Limb Cell
2
Mesangial Cell
2
Monocyte
2
Monocyte-derived Cell
2
Myofibroblast
2
Natural Killer T Cell
2
Natural Killer T Cell Type 1
2
Natural Killer T Cell Type 2
2
Non-Classical Monocyte
2
Parietal Epithelial Cell
2
Peritubular Capillary Endothelial Cell
2
Plasma Cell
2
Plasmacytoid Dendritic Cell
2
Podocyte
2
Principal Cell
2
Proximal Tubule Epithelial Cell Segment 1 and 2
2
Proximal Tubule Epithelial Cell Segment 3
2
Regulatory T Cell
2
Renin-positive Juxtaglomerular Granular Cell
2
Schwann cell
2
T Cell
2
Transitional Principal-Intercalated Cell
2
Vascular Smooth Muscle Cell / Pericyte
2
activated CD8-positive, alpha-beta T cell
2
articular chondrocyte
2
blood vessel smooth muscle cell
2
brain pericyte
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
ciliated cell
2
club cell
2
dermis microvascular lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endothelial cell of lymphatic vessel
2
enteric smooth muscle cell
2
extracellular matrix secreting cell
2
fat cell
Organ
4
epithelium
Life stage
4
unknown
Date released
3
September, 2022
1
February, 2021
Software used
2
r
1
chromhmm
1
encode-ccres
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type!
gene expression
software_used.software.name!
macs
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
FileSet
DSR413BMO
released
Annotation file set
: Candidate regulatory elements for BSS01385 non-pigmented ciliary epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR639AVN
released
Annotation file set
: Target gene predictions for BSS01385 non-pigmented ciliary epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR561UII
released
Annotation file set
: Chromatin states for BSS01385 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR622ULQ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE non-pigmented ciliary epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP