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Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
histone modifications
Annotation Category
4
cis-regulatory elements
2
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
stem cell
Biosample term
116
monocyte
55
HeLa-S3
48
CD8-positive, alpha-beta T cell
43
H1-hESC
33
islet of Langerhans
32
fibroblast
32
kidney
32
neural progenitor cell
31
endothelial cell
30
heart
30
macrophage
30
retina
28
stomach
26
liver
24
brain
23
K562
20
breast cancer cell
20
pigmented layer of retina
20
smooth muscle cell
19
CD14-positive monocyte
19
HFFc6
19
adrenal gland
19
lung
19
muscle of arm
19
muscle of leg
19
pancreatic ductal cell
19
pericyte cell
18
B cell
18
adipocyte
18
heart left ventricle
18
hepatocyte
18
placenta
18
small intestine
17
embryonic stem cell
17
large intestine
16
subcutaneous adipose tissue
15
CD4-positive, alpha-beta T cell
15
EndoC_BH1
15
common myeloid progenitor, CD34-positive
15
keratinocyte
15
muscle of back
15
spleen
14
cardiac muscle cell
14
pancreas
14
pancreatic beta cell
14
spinal cord
14
thymus
13
GM12878
13
H9
13
coronary artery
13
endothelial cell of umbilical vein
13
left lung
13
pancreatic acinar cell
13
renal cortex interstitium
13
renal pelvis
13
retinal pigment epithelial cell
13
tibial nerve
12
astrocyte
12
excitatory neuron
12
foreskin fibroblast
12
hematopoietic multipotent progenitor cell
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
12
right lung
11
MCF-7
11
T cell
11
caudate nucleus
11
endothelial cell of hepatic sinusoid
11
erythroblast
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
pancreatic alpha cell
11
pancreatic delta cell
11
putamen
11
tibial artery
10
HepG2
10
Rhabdomyosarcoma
10
adipose tissue
10
gastric cancer cell
10
mesenchymal stem cell
10
natural killer cell
10
neuronal stem cell
10
osteoblast
10
regulatory T cell
10
right atrium auricular region
10
right kidney
10
substantia nigra
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
skeletal muscle myoblast
8
A549
8
Ammon's horn
8
B-lymphoblastoid cell line
8
body of pancreas
8
fibroblast cell line
8
foreskin keratinocyte
8
heart right ventricle
8
neutrophil
8
omental fat pad
8
pituitary stalk
7
CD4-positive helper T cell
7
Jurkat
7
esophageal adenocarcinoma
7
frontal cortex
7
left cardiac atrium
7
mature neutrophil
7
ovary
7
skeletal muscle satellite cell
7
testis
6
Chondroid Chordoma
6
HEK293
6
HUES8
6
IMR-90
6
LNCAP
6
T-helper 1 cell
6
ascending aorta
6
bronchial epithelial cell
6
chondrocyte
6
fibroblast of cardiac tissue
6
fibroblast of lung
6
hESC cell
6
iPSC derived cell line
6
induced pluripotent stem cell
6
left kidney
6
lymphocyte
6
mammary gland epithelial cell
6
neuroblastoma cell line
6
pancreatic stellate cell
6
sigmoid colon
6
trophoblast cell
6
upper lobe of left lung
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta memory T cell
5
CyT49
5
Ewing sarcoma
5
GM06990
5
GM12864
5
GM12865
5
GM19240
5
HAP-1
5
HCT-116 cell
5
HL-60
5
HT-29
5
KARPAS-422 cell
5
PC-9
5
SGBS preadipocytes
5
acute myeloid leukemia
5
amygdala
5
cerebellum
5
choroid plexus epithelial cell
5
enterocyte
5
glutamatergic neuron
5
hepatic stellate cell
5
mesendoderm
5
osteosarcoma
5
prostate cancer cell line
5
prostate gland
5
right lobe of liver
5
skeletal muscle fiber
5
skin fibroblast
5
smooth muscle cell of the coronary artery
5
temporal lobe
5
transverse colon
5
type I muscle cell
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
B-lymphocyte
4
BE(2)-C
4
BJ cell
4
C1 segment of cervical spinal cord
4
CD1c-positive myeloid dendritic cell
4
CMK
4
COLO205
4
Caco-2 cell
4
GM12873
4
GM12875
4
GM18505
4
GM19099
4
GM19193
4
GM19238
4
GM19239
4
GM23248
4
HAC cell
4
HBMEC cell
4
HS-SY-2 cell
4
Ishikawa
4
LoVo cell
4
MDA-MB-231 cell
4
MG63
4
MM.1S
4
Mantle cell lymphoma
4
NCCIT cell
4
NHEK
4
OCI-LY7
4
PANC-1 cell
Life stage
1
embryonic
Date released
3
February, 2021
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
annotation_type!
gene expression
month_released!
September, 2022
Showing 6 of 6 results
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Download
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP