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Schema
Citing CMDGA
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Annotation type
gene expression
1
accessible chromatin
1
binding sites
1
caQTL
1
histone modifications
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
2
ATAC-seq
2
ChIP-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
1
snATAC-seq
Available data
5
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
3
cell line
2
primary cell
Biosample term
20
coronary artery
20
endothelial cell of umbilical vein
18
tibial artery
15
ascending aorta
12
aorta
12
endothelial cell of hepatic sinusoid
11
thoracic aorta
10
dermis blood vessel endothelial cell
8
fibroblast of pulmonary artery
7
pulmonary artery endothelial cell
5
brain microvascular endothelial cell
5
fibroblast of the aortic adventitia
5
kidney capillary endothelial cell
5
smooth muscle cell of the coronary artery
4
aortic endothelial cell
3
pancreatic endothelial cell
2
Afferent / Efferent Arteriole Endothelial Cell
2
Degenerative Peritubular Capillary Endothelial Cell
2
Glomerular Capillary Endothelial Cell
2
Peritubular Capillary Endothelial Cell
2
capillary endothelial cell
2
vein endothelial cell
1
brain microvascular endothelial cell
1
abdominal aorta artery
1
aorta wall
1
aortic smooth muscle cell
1
circle of Willis
1
endothelial cell of coronary artery
1
placental villus capillary endothelial cell
Organ
5
artery
5
blood vessel
5
heart
5
vasculature
Life stage
1
unknown
Date released
3
February, 2021
1
February, 2023
1
May, 2021
Software used
3
macs
1
abc
1
rasqual
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
annotation_type!
gene expression
Showing 5 of 5 results
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FileSet
DSR702NJX
released
Annotation file set
: Chromatin accessibility QTLs in smooth muscle cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR442EVO
released
Annotation file set
: Accessible chromatin of smooth muscle cell of the coronary artery from GSE113348 ATAC-seq cell lines
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR951OND
released
Annotation file set
: Histone modifications annotation for Cardiovascular HCASMC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR898IID
released
Annotation file set
: Binding sites annotation for Cardiovascular HCASMC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR886XYE
released
Annotation file set
: enhancer-gene predicton of coronary_artery_smooth_muscle_cell-Miller2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP