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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
gene expression
Annotation Category
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
Available data
1
bed bed3+
1
bigWig
File set status
1
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
1
Homo sapiens
Biosample type
1
in vitro differentiated cells
Biosample term
72
brain
21
caudate nucleus
17
substantia nigra
16
layer of hippocampus
14
cerebellum
14
frontal cortex
14
putamen
13
temporal lobe
11
Ammon's horn
10
SK-N-DZ
10
SK-N-SH
10
angular gyrus
10
choroid plexus epithelial cell
10
pituitary stalk
9
cingulate gyrus
8
SK-N-MC
8
globus pallidus
8
midbrain
7
BE(2)-C
6
Brodmann (1909) area 46
6
Daoy
6
amygdala
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
hypothalamus
6
medulla oblongata
6
middle frontal gyrus
6
nucleus accumbens
6
pons
5
cardiac fibroblast
5
A172
5
M059J
5
anterior cingulate cortex
5
brain microvascular endothelial cell
5
cerebellar cortex
5
cerebellum (Hemisphere)
4
H54
4
U-87 MG
4
brain pericyte
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
inferior parietal cortex
4
medulloblastoma
3
prefrontal cortex
2
dorsolateral prefrontal cortex
2
middle frontal area 46
2
pituitary gland
1
brain microvascular endothelial cell
1
BE2C
1
Brodmann (1909) area 9
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Glioblastoma
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
cardiac fibroblast
1
cerebellar hemisphere
1
claustrum of brain
1
dentate nucleus
1
dorsal lateral geniculate nucleus
1
dura mater
1
entorhinal cortex
1
frontal pole
1
hippocampal neuron
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
mid-frontal lobe
1
myelencephalon
1
nucleus of ventral thalamus
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pontine tegmentum
1
precentral gyrus
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
septal nuclear complex
1
subiculum
1
superior parietal cortex
1
temporal pole
1
thalamic complex
1
undifferentiated ESC (H9 cell line)
Organ
1
brain
Life stage
1
unknown
Date released
1
January, 2022
Software used
1
macs
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
annotation_type!
gene expression
Showing 1 of 1 results
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FileSet
DSR721DBF
released
Annotation file set
: Accessible chromatin annotation from ATAC-seq_iPSC-derived hippocampal DG-like neurons; Homo sapiens; ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP