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Schema
Citing CMDGA
Clear Filters
Annotation type
4
target gene predictions
3
accessible chromatin
1
candidate regulatory elements
1
chromatin state
Annotation Category
4
cis-regulatory elements
Annotation type Category
3
snATAC-seq
1
ChIP-seq
Available data
3
bed bed3+
3
bigWig
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
cell line
Biosample term
16
small intestine
14
large intestine
6
sigmoid colon
5
transverse colon
4
Peyer's patch
4
colon epithelial cell
3
colonic mucosa
3
duodenal mucosa
3
enterocyte
3
mucosa of rectum
2
HT-29
2
SW480
2
enteric smooth muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
rectum smooth muscle tissue
1
HCT-116 cell
1
HCT116
1
RKO
1
crypt of Lieberkuhn
1
enterocyte of epithelium of small intestine
1
paneth cell
1
small intestine goblet cell
Organ
4
epithelium
4
intestine
4
large intestine
Life stage
1
unknown
Date released
3
November, 2021
1
September, 2022
Software used
3
macs
1
chromhmm
Lab
3
Bing Ren, UCSD
1
AMP-T2D consortium
Project
3
ENCODE
1
AMP
RFA
3
ENCODE3
1
AMP
annotation_type!
gene expression
Showing 4 of 4 results
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Download
FileSet
DSR024YCW
released
Annotation file set
: Chromatin states for BSS00223 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR609IPL
released
Annotation file set
: Accessible chromatin annotation of Colon Epithelial Cell 3 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR419PGV
released
Annotation file set
: Accessible chromatin annotation of Colon Epithelial Cell 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR903BJH
released
Annotation file set
: Accessible chromatin annotation of Colon Epithelial Cell 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE