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Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
2
variant allelic effects
Annotation Category
5
cis-regulatory elements
2
Genetic variant effects
Annotation type Category
7
snATAC-seq
Available data
7
bed bed3+
3
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
3
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
35
muscle of arm
32
muscle of leg
28
muscle of back
12
psoas muscle
10
gastrocnemius medialis
9
muscle of trunk
9
skeletal muscle satellite cell
9
skeletal muscle tissue
7
esophagus muscularis mucosa
7
skeletal muscle fiber
6
type I muscle cell
6
type II muscle cell
5
LHCN-M2
5
gastroesophageal sphincter
5
myotube
5
stomach smooth muscle
4
gastrocnemius medialis(Muscle - Skeletal)
4
left ventricle myocardium
4
skeletal muscle cell
3
A673
3
SJCRH30
2
hindlimb muscle
2
muscle of leg
2
cardiac muscle myoblast
2
forelimb muscle
2
rectum smooth muscle tissue
2
respiratory system smooth muscle
2
skeletal muscle
2
somatic muscle myotube
1
aortic smooth muscle cell
1
hindlimb muscle
1
rectal smooth muscle tissue
1
smooth muscle tissue
Organ
7
musculature of body
Date released
4
February, 2024
3
November, 2021
Software used
5
macs
2
deeptools
2
deltasvm
r
2
samtools
2
umitools
Lab
5
Bing Ren, UCSD
2
Stephen Parker, UMich
Project
4
AMP
3
ENCODE
RFA
3
ENCODE3
2
AMP
2
AMP2
annotation_type!
hQTL
software_used.software.name!
r
Showing 7 of 7 results
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Download
FileSet
DSR584RYA
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 3 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR222MBS
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR958BVX
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR887UQH
released
Annotation file set
: Cell type chromatin broad peaks and bw of neuromuscular junction from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR353GUO
released
Annotation file set
: Cell type chromatin broad peaks and bw of muscle fiber mixed from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR776HHT
released
Annotation file set
: Variant allelic effects annotation of Skeletal muscle fiber type 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR640ZDY
released
Annotation file set
: Variant allelic effects annotation of Skeletal muscle fiber type 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP