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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
binding sites
histone modifications
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
3
DNase-seq
2
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
cell line
1
primary cell
Biosample term
84
heart
70
brain
70
kidney
67
muscle of arm
63
stomach
62
lung
58
muscle of leg
58
placenta
55
large intestine
55
small intestine
54
muscle of back
53
H1-hESC
53
HeLa-S3
52
left lung
47
thymus
45
right lung
42
right kidney
40
renal cortex interstitium
40
renal pelvis
37
adrenal gland
36
left kidney
35
neural progenitor cell
34
spinal cord
31
endothelial cell
28
fibroblast
27
islet of Langerhans
27
macrophage
27
monocyte
24
smooth muscle cell
23
CD4-positive, alpha-beta memory T cell
22
EndoC_BH1
22
pericyte cell
22
trophoblast cell
21
K562
21
adipocyte
21
foreskin keratinocyte
21
liver
21
pancreatic ductal cell
19
B cell
19
CD14-positive monocyte
19
HFFc6
19
endothelial cell of umbilical vein
18
heart left ventricle
18
keratinocyte
17
T-helper 17 cell
17
foreskin fibroblast
17
muscle of trunk
16
H9
16
astrocyte
16
cardiac muscle cell
16
chorionic villus
16
embryonic stem cell
16
induced pluripotent stem cell
15
hepatocyte
15
retina
15
retinal pigment epithelial cell
14
CD8-positive, alpha-beta T cell
14
heart right ventricle
14
pancreatic acinar cell
14
regulatory T cell
13
T cell
13
excitatory neuron
13
mesenchymal stem cell
13
neurosphere
13
osteoblast
13
pancreatic beta cell
13
spleen
12
common myeloid progenitor, CD34-positive
12
left renal cortex interstitium
12
pancreatic delta cell
11
HepG2
11
T-helper 1 cell
11
erythroblast
11
fibroblast of cardiac tissue
11
fibroblast of lung
11
left cardiac atrium
11
left renal pelvis
11
right renal pelvis
10
GM12878
10
SK-N-SH
10
T-helper 2 cell
10
bronchial epithelial cell
10
epithelial cell of prostate
10
neutrophil
10
right renal cortex interstitium
10
skeletal muscle myoblast
10
skin fibroblast
10
trophoblast
9
22Rv1
9
SK-N-DZ
9
cardiomyocytes
9
pancreatic alpha cell
9
progenitor cell of endocrine pancreas
9
tongue
8
HEK293
8
IMR-90
8
NAMALWA cell
8
adipose tissue
8
breast cancer cell
8
chorion membrane
8
choroid plexus epithelial cell
8
colon epithelial cell
8
fibroblast of dermis
8
limb
8
lymphoblastoid cell line
8
lymphocyte
8
mammary gland epithelial cell
8
ovary
8
pancreatic stellate cell
8
pituitary stalk
8
skeletal muscle fiber
7
CD4-positive, alpha-beta T cell
7
CD8-positive, alpha-beta memory T cell
7
GM06990
7
GM12864
7
GM12865
7
PC-9
7
SK-N-MC
7
WERI-Rb-1
7
WI38
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast cell line
7
glomerular endothelial cell
7
memory B cell
7
skeletal muscle satellite cell
7
testis
6
AG04449 cell
6
AG04450 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CD4-positive helper T cell
6
CMK
6
Daoy
6
GM08714
6
HUES6
6
HUES8
6
MG63
6
NT2-D1 cell
6
SGBS preadipocytes
6
cardiac precursors (cardiac muscle cell)
6
dermis lymphatic vessel endothelial cell
6
endodermal cell
6
fibroblast of pulmonary artery
6
foreskin melanocyte
6
glomerular visceral epithelial cell
6
hematopoietic multipotent progenitor cell
6
iPSC derived cell line
6
mesendoderm
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuronal stem cell
6
pancreas
6
psoas muscle
6
type I muscle cell
5
A673
5
GM12891
5
GM12892
5
GM18507
5
H7-hESC
5
HUES64
5
Jurkat
5
L1-S8
5
MCF-7
5
Panc1
5
SJCRH30
5
T follicular helper cell
5
cardiomyocytes (cardiac muscle cell)
5
coronary artery
5
enterocyte
5
kidney epithelial cell
5
mammary epithelial cell
5
natural killer cell
5
neural cell
5
non-pigmented ciliary epithelial cell
5
renal cortical epithelial cell
5
sigmoid colon
5
skeletal muscle cell
5
skeletal muscle tissue
5
skin of body
4
A549
4
CyT49
4
DND-41
4
EH
4
EL
4
ELF-1
4
ELR
4
G401
4
GM03348
4
GM19240
4
HCT-116 cell
4
HK-2 cell
4
HUES48
4
KARPAS-422 cell
4
KOPT-K1
4
L1-S8R
4
NCI-H460 cell
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
Rh-4 cell
Organ
4
lung
1
epithelium
1
kidney
Life stage
adult
Date released
2
June, 2020
1
February, 2021
1
May, 2021
1
October, 2022
Software used
3
macs
1
abc
1
chromhmm
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
annotation_type!
histone modifications
relevant_life_stage!
adult
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR259UTD
released
Annotation file set
: Binding sites annotation for A549 (A549) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR378GKW
released
Annotation file set
: Binding sites annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR510YWQ
released
Annotation file set
: enhancer-gene predicton of A549_treated_with_ethanol_0.02_percent_for_1_hour-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR008HJP
released
Annotation file set
: Accessible chromatin annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR317RFI
released
Annotation file set
: Accessible chromatin annotation for Kidney Kidney glomerular epithelial cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP