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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
1
binding sites
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
9
ChIP-seq
DNase-seq
1
pCHi-C
Available data
2
bed bed3+
2
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
42
islet of Langerhans
32
kidney
27
heart
27
retina
25
liver
22
brain
21
stomach
20
pigmented layer of retina
19
lung
19
subcutaneous adipose tissue
18
adipose tissue
17
adrenal gland
17
small intestine
16
muscle of arm
16
placenta
15
muscle of leg
14
heart left ventricle
14
thymus
13
coronary artery
13
large intestine
13
left lung
13
muscle of back
13
tibial nerve
11
right atrium auricular region
11
right lung
11
spleen
11
tibial artery
10
body of pancreas
10
caudate nucleus
10
omental fat pad
10
right kidney
10
substantia nigra
9
cerebellum
9
frontal cortex
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
ascending aorta
8
heart right ventricle
8
pancreas
8
putamen
8
spinal cord
7
Ammon's horn
7
aorta
7
left cardiac atrium
7
ovary
7
psoas muscle
6
amygdala
6
anterior cingulate cortex
6
hypothalamus
6
layer of hippocampus
6
nucleus accumbens
6
right lobe of liver
6
sigmoid colon
6
skeletal muscle tissue
6
temporal lobe
6
testis
5
C1 segment of cervical spinal cord
5
cerebellum (Hemisphere)
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
prostate gland
5
right cardiac atrium
5
thoracic aorta
5
thyroid gland
5
transverse colon
4
angular gyrus
4
bone tissue
4
cartilage tissue
4
chorionic villus
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
esophagus
4
gastrocnemius medialis
4
muscle of trunk
4
skin of body
4
trophoblast
4
upper lobe of left lung
4
vagina
4
visceral abdominal adipose tissue
3
Peyer's patch
3
chorion membrane
3
cingulate gyrus
3
colonic mucosa
3
dorsolateral prefrontal cortex
3
duodenal mucosa
3
esophagus muscularis mucosa
3
mucosa of rectum
3
stomach smooth muscle
3
uterus
2
Brodmann (1909) area 46
2
blood
2
breast epithelium
2
cortex of kidney
2
esophagus squamous epithelium
2
eye
2
fallopian tube
2
germinal matrix
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
midbrain
2
minor salivary gland
2
muscle layer of colon
2
muscle layer of duodenum
2
occipital lobe
2
pancreatic ductal cell
2
pancreatic stellate cell
2
parathyroid adenoma
2
rectum smooth muscle tissue
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle
2
tissue
2
tongue
2
urinary bladder
1
Pancreatic islets
1
Schwann cell
1
abdominal aorta artery
1
amnion
1
aorta wall
1
aortic valve
1
arm bone
1
bladder
1
bladder (urinary bladder)
1
breast
1
breast - mammary tissue
1
breast carcinoma
1
caput epididymis
1
cerebellar cortex
1
cerebellar hemisphere
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
cortex
1
diencephalon
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
embryonic facial prominence
1
endometrium
1
endometrium cancer
1
endothelial cell
1
epididymis
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
femur
1
first pancreatic bud
1
gastric (mucosa of stomach)
1
gastroesophageal sphincter
1
germinal center
1
globus pallidus
1
inferior parietal cortex
1
kidney - cortex
1
kidney - medulla
1
kidney epithelium
1
leg bone
1
mammary gland
1
medulla oblongata
1
medulloblastoma
1
metanephros
1
mid-frontal lobe
1
middle frontal gyrus
1
mitral valve
1
mucosa of stomach
1
nephron tubule
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
1
parietal lobe
1
pituitary
1
pituitary gland
1
pons
1
prefrontal cortex
1
prostate
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
pulmonary valve
1
renal connecting tubule
1
renal glomerulus
1
respiratory system smooth muscle
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
skin of forearm
1
skin of prepuce of penis
1
small intestine - terminal Ileum
1
subcutaneous abdominal adipose tissue
1
superior temporal gyrus
1
synovial joint
Organ
4
embryo
Life stage
2
embryonic
Date released
2
September, 2022
1
February, 2021
1
March, 2020
Software used
2
chromhmm
1
macs
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type!
histone modifications
annotation_type_category!
DNase-seq
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR504NNS
released
Annotation file set
: Chromatin states for BSS01860 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR950EAR
released
Annotation file set
: Chromatin states for BSS01859 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR678UGU
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_trophoblast_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR181ORU
released
Annotation file set
: A target gene prediction annotation in Human Trophoblast of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP