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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
stem cell
Biosample term
86
heart
84
stomach
72
kidney
69
brain
67
lung
67
muscle of arm
64
HeLa-S3
63
small intestine
61
A549
61
adrenal gland
58
muscle of leg
58
placenta
55
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
47
thymus
45
H1-hESC
45
liver
45
right lung
42
right kidney
41
hematopoietic multipotent progenitor cell
40
B cell
40
K562
40
renal cortex interstitium
40
renal pelvis
37
retina
36
left kidney
34
spinal cord
33
islet of Langerhans
33
spleen
32
CD4-positive, alpha-beta memory T cell
32
heart left ventricle
31
CD14-positive monocyte
31
endothelial cell
30
fibroblast
30
monocyte
29
adipose tissue
28
macrophage
28
neural progenitor cell
24
MCF-7
24
adipocyte
24
hepatocyte
24
smooth muscle cell
23
sigmoid colon
22
CD8-positive, alpha-beta memory T cell
22
pericyte cell
22
trophoblast cell
21
T cell
21
foreskin keratinocyte
21
pancreas
20
mononuclear cell
20
pigmented layer of retina
20
psoas muscle
20
regulatory T cell
19
HFFc6
19
endothelial cell of umbilical vein
19
natural killer cell
19
ovary
19
tibial nerve
18
CD8-positive, alpha-beta T cell
18
body of pancreas
18
gastrocnemius medialis
18
heart right ventricle
18
keratinocyte
18
mesenchymal stem cell
18
thyroid gland
18
transverse colon
17
foreskin fibroblast
17
muscle of trunk
16
H9
16
chorionic villus
16
fibroblast of lung
15
CD4-positive, alpha-beta T cell
15
GM12878
15
T-helper 1 cell
15
cardiac muscle cell
15
caudate nucleus
15
coronary artery
15
embryonic stem cell
15
neutrophil
15
retinal pigment epithelial cell
15
skeletal muscle myoblast
15
testis
15
upper lobe of left lung
14
T-helper 17 cell
14
T-helper 2 cell
14
astrocyte
14
endocrine pancreas
14
fibroblast of cardiac tissue
14
layer of hippocampus
14
mammary gland epithelial cell
14
pancreatic ductal cell
14
skeletal muscle tissue
13
EndoC_BH1
13
Peyer's patch
13
neurosphere
13
pancreatic beta cell
13
right atrium auricular region
13
skeletal muscle satellite cell
13
tibial artery
12
HepG2
12
aorta
12
excitatory neuron
12
fibroblast of dermis
12
left renal cortex interstitium
12
osteoblast
12
pancreatic acinar cell
12
prostate gland
11
breast epithelium
11
endothelial cell of hepatic sinusoid
11
erythroblast
11
left renal pelvis
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
pancreatic alpha cell
11
pancreatic delta cell
11
right renal pelvis
10
bronchial epithelial cell
10
epithelial cell of prostate
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
kidney tubule cell
10
left cardiac atrium
10
right renal cortex interstitium
10
skin fibroblast
10
subcutaneous adipose tissue
10
substantia nigra
10
temporal lobe
10
thoracic aorta
10
trophoblast
9
22Rv1
9
SK-N-SH
9
colonic mucosa
9
esophagus
9
mammary epithelial cell
9
omental fat pad
9
parathyroid adenoma
9
tongue
8
HEK293
8
IMR-90
8
NAMALWA cell
8
ascending aorta
8
breast cancer cell
8
choroid plexus epithelial cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
frontal cortex
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
lymphoblastoid cell line
8
lymphocyte
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
putamen
8
skeletal muscle fiber
8
vagina
7
Ammon's horn
7
GM06990
7
GM12864
7
GM12865
7
GM19240
7
HAP-1
7
HL-60
7
HT-29
7
KARPAS-422 cell
7
SK-N-DZ
7
T47D
7
angular gyrus
7
chorion membrane
7
endometrium adenocarcinoma
7
eye
7
fibroblast cell line
7
glomerular endothelial cell
7
hepatic stellate cell
7
kidney glomerular epithelial cell
7
renal cortical epithelial cell
7
stomach smooth muscle
7
uterus
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
CD4-positive helper T cell
6
CMK
6
Caco-2 cell
6
Daoy
6
GM08714
6
GM10248
6
GM10266
6
GM12875
6
GM19238
Life stage
4
embryonic
Date released
3
September, 2022
2
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
annotation_type!
histone modifications
files.file_type!
tsv
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP