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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
histone modifications
Annotation Category
4
cis-regulatory elements
3
Target gene links
Annotation type Category
5
DNase-seq
4
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
6
in vitro differentiated cells
1
stem cell
Biosample term
65
heart
64
stomach
61
HeLa-S3
56
kidney
51
muscle of arm
50
lung
49
brain
47
small intestine
46
adrenal gland
44
H1-hESC
43
A549
43
muscle of leg
43
placenta
42
large intestine
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
36
thymus
34
K562
34
retina
34
right lung
32
B cell
31
hematopoietic multipotent progenitor cell
31
renal cortex interstitium
31
renal pelvis
31
right kidney
30
endothelial cell
30
liver
28
fibroblast
27
CD14-positive monocyte
27
left kidney
26
spinal cord
26
spleen
24
monocyte
24
neural progenitor cell
23
CD4-positive, alpha-beta memory T cell
23
heart left ventricle
22
smooth muscle cell
21
adipocyte
21
macrophage
21
pericyte cell
20
adipose tissue
20
pigmented layer of retina
19
HFFc6
19
MCF-7
18
hepatocyte
17
CD8-positive, alpha-beta T cell
17
foreskin keratinocyte
17
pancreas
17
sigmoid colon
16
T cell
16
keratinocyte
16
trophoblast cell
15
CD8-positive, alpha-beta memory T cell
15
H9
15
foreskin fibroblast
15
ovary
15
psoas muscle
14
GM12878
14
cardiac muscle cell
14
gastrocnemius medialis
14
islet of Langerhans
14
mononuclear cell
14
natural killer cell
14
regulatory T cell
14
retinal pigment epithelial cell
14
tibial nerve
14
transverse colon
13
astrocyte
13
body of pancreas
13
mesenchymal stem cell
13
thyroid gland
12
CD4-positive, alpha-beta T cell
12
excitatory neuron
12
fibroblast of lung
12
heart right ventricle
12
muscle of trunk
12
pancreatic beta cell
12
pancreatic ductal cell
12
upper lobe of left lung
11
EndoC_BH1
11
HepG2
11
Peyer's patch
11
T-helper 1 cell
11
chorionic villus
11
fibroblast of cardiac tissue
11
osteoblast
11
testis
10
caudate nucleus
10
endocrine pancreas
10
layer of hippocampus
10
mammary gland epithelial cell
10
pancreatic acinar cell
10
pancreatic alpha cell
10
right renal pelvis
10
skeletal muscle myoblast
9
T-helper 2 cell
9
erythroblast
9
fibroblast of dermis
9
left renal cortex interstitium
9
left renal pelvis
9
mammary epithelial cell
9
neurosphere
9
pancreatic delta cell
9
skeletal muscle satellite cell
9
skeletal muscle tissue
9
skin fibroblast
8
T-helper 17 cell
8
breast cancer cell
8
breast epithelium
8
choroid plexus epithelial cell
8
embryonic stem cell
8
epithelial cell of prostate
8
left cardiac atrium
8
pituitary stalk
8
right atrium auricular region
8
trophoblast
7
22Rv1
7
HEK293
7
IMR-90
7
SK-N-SH
7
bronchial epithelial cell
7
colonic mucosa
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
fibroblast cell line
7
kidney tubule cell
7
lower leg skin
7
lymphocyte
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
neutrophil
7
omental fat pad
7
prostate gland
7
temporal lobe
6
Ammon's horn
6
CD4-positive helper T cell
6
GM06990
6
GM12864
6
GM12865
6
GM19240
6
HAP-1
6
HL-60
6
HT-29
6
HUES8
6
MM.1S
6
NAMALWA cell
6
OCI-LY7
6
PC-9
6
SGBS preadipocytes
6
cingulate gyrus
6
colon epithelial cell
6
endometrium adenocarcinoma
6
esophagus
6
eye
6
immortal human breast epithelial cell line cell
6
neuronal stem cell
6
parathyroid adenoma
6
substantia nigra
6
tongue
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Caco-2 cell
5
Daoy
5
GM08714
5
GM10248
5
GM10266
5
GM12875
5
GM19238
5
GM19239
5
GM23248
5
HCT116
5
HUES6
5
Jurkat
5
KARPAS-422 cell
5
KBM-7
5
LHCN-M2
5
LNCAP
5
LNCaP clone FGC
5
LoVo cell
5
MG63
5
NT2-D1 cell
5
PC-3
5
RPMI8226
5
SJSA1
5
SK-N-MC
5
T47D
5
WI38
5
chorion membrane
5
endodermal cell
5
enterocyte
5
frontal cortex
5
glomerular visceral epithelial cell
Life stage
3
embryonic
Date released
2
February, 2021
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
annotation_type!
histone modifications
organ_slims!
blood vessel
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP