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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
target gene predictions
1
variant allelic effects
Annotation Category
1
Genetic variant effects
1
Target gene links
1
cis-regulatory elements
Annotation type Category
2
snATAC-seq
1
ATAC-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
54
common myeloid progenitor, CD34-positive
41
monocyte
40
B cell
38
endothelial cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
29
hepatocyte
27
fibroblast
25
regulatory T cell
23
epithelial cell of proximal tubule
22
CD8-positive, alpha-beta memory T cell
22
T-helper 1 cell
22
pericyte cell
21
glomerular endothelial cell
21
macrophage
20
CD8-positive, alpha-beta T cell
20
T cell
20
T-helper 17 cell
20
endothelial cell of umbilical vein
20
mononuclear cell
20
smooth muscle cell
19
foreskin keratinocyte
19
natural killer cell
18
pancreatic beta cell
17
pancreatic alpha cell
17
pancreatic ductal cell
17
trophoblast cell
16
T-helper 2 cell
16
endothelial cell of hepatic sinusoid
16
fibroblast of lung
16
pancreatic acinar cell
16
pancreatic delta cell
15
CD4-positive, alpha-beta T cell
15
astrocyte
15
keratinocyte
15
osteoblast
15
skeletal muscle myoblast
14
foreskin fibroblast
14
neutrophil
13
mammary gland epithelial cell
13
naive thymus-derived CD4-positive, alpha-beta T cell
13
neurosphere
13
skeletal muscle satellite cell
12
excitatory neuron
12
fibroblast of cardiac tissue
12
fibroblast of dermis
11
bronchial epithelial cell
11
erythroblast
11
glomerular visceral epithelial cell
10
dermis blood vessel endothelial cell
10
kidney tubule cell
10
mammary epithelial cell
9
epithelial cell of prostate
9
memory B cell
9
naive T cell
9
retinal pigment epithelial cell
9
skeletal muscle fiber
9
skin fibroblast
8
fibroblast of breast
8
glutamatergic neuron
8
hepatic stellate cell
8
kidney glomerular epithelial cell
8
mature neutrophil
8
myoepithelial cell of mammary gland
8
naive thymus-derived CD8-positive, alpha-beta T cell
8
pancreatic stellate cell
8
renal cortical epithelial cell
7
cardiac muscle cell
7
choroid plexus epithelial cell
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
kidney epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
luminal epithelial cell of mammary gland
7
mesangial cell
7
mesenchymal stem cell
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
CD1c-positive myeloid dendritic cell
6
T-cell
6
alternatively activated macrophage
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
epithelial cell of esophagus
6
foreskin melanocyte
6
gamma-delta T cell
6
naive B cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
pulmonary artery endothelial cell
6
skeletal muscle cell
6
smooth muscle cell of the brain vasculature
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
brain microvascular endothelial cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
gabaergic neuron
5
inflammatory macrophage
5
inhibitory neuron
5
iris pigment epithelial cell
5
kidney capillary endothelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
5
mast cell
5
myofibroblast cell
5
non-pigmented ciliary epithelial cell
5
pancreatic endothelial cell
5
peripheral blood mononuclear cell
5
plasma cell
4
T follicular helper cell
4
adipocyte
4
adult endothelial progenitor cell
4
astrocyte of the spinal cord
4
blood vessel smooth muscle cell
4
cardiac fibroblast
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
mesothelial cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
Organ
3
epithelium
3
stomach
Date released
2
November, 2021
1
February, 2024
Software used
1
abc
1
deltasvm
1
macs
Lab
3
Bing Ren, UCSD
Project
2
ENCODE
1
AMP
RFA
2
ENCODE3
1
AMP
annotation_type!
histone modifications
month_released!
January, 2022
Showing 3 of 3 results
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Download
FileSet
DSR771TGI
released
Annotation file set
: Target gene predictions of Chief Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR570UBU
released
Annotation file set
: Accessible chromatin annotation of Chief Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR552HSG
released
Annotation file set
: Variant allelic effects annotation of Gastric chief cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP