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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
binding sites
1
chromatin state
histone modifications
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
in vitro differentiated cells
Biosample term
78
heart
78
stomach
65
lung
64
brain
60
kidney
59
A549
59
small intestine
56
adrenal gland
55
placenta
53
common myeloid progenitor, CD34-positive
53
large intestine
52
left lung
44
right lung
43
thymus
40
hematopoietic multipotent progenitor cell
40
right kidney
38
renal cortex interstitium
37
renal pelvis
36
left kidney
32
CD4-positive, alpha-beta memory T cell
30
B cell
30
liver
30
spinal cord
28
spleen
24
heart left ventricle
22
CD8-positive, alpha-beta memory T cell
22
K562
22
MCF-7
20
adipose tissue
20
foreskin keratinocyte
20
mononuclear cell
20
sigmoid colon
18
trophoblast cell
17
neural progenitor cell
16
CD14-positive monocyte
16
body of pancreas
16
chorionic villus
15
endocrine pancreas
15
fibroblast of lung
15
ovary
15
thyroid gland
15
transverse colon
14
endothelial cell of umbilical vein
14
upper lobe of left lung
13
Peyer's patch
13
adipocyte
13
foreskin fibroblast
13
layer of hippocampus
13
neurosphere
13
testis
13
tibial nerve
12
HeLa-S3
12
T cell
12
T-helper 1 cell
12
caudate nucleus
12
heart right ventricle
12
keratinocyte
11
CD4-positive, alpha-beta T cell
11
T-helper 17 cell
11
T-helper 2 cell
11
cardiac muscle cell
11
fibroblast of dermis
11
mammary gland epithelial cell
11
retina
10
angular gyrus
10
aorta
10
bronchial epithelial cell
10
dermis blood vessel endothelial cell
10
fibroblast of cardiac tissue
10
natural killer cell
10
regulatory T cell
10
skeletal muscle myoblast
10
temporal lobe
9
22Rv1
9
H9
9
SK-N-SH
9
ascending aorta
9
breast cancer cell
9
breast epithelium
9
chorion membrane
9
cingulate gyrus
9
colonic mucosa
9
duodenal mucosa
9
endometrium adenocarcinoma
9
epithelial cell of prostate
9
esophagus squamous epithelium
9
left renal cortex interstitium
9
neutrophil
9
parathyroid adenoma
9
right renal cortex interstitium
9
substantia nigra
8
CD8-positive, alpha-beta T cell
8
HepG2
8
SK-N-DZ
8
coronary artery
8
embryonic stem cell
8
endodermal cell
8
eye
8
immortal human breast epithelial cell line cell
8
lower leg skin
8
mesenchymal stem cell
8
myoepithelial cell of mammary gland
8
naive T cell
8
omental fat pad
8
pancreas
8
prostate gland
8
right renal pelvis
8
thoracic aorta
8
tongue
7
GM12878
7
HEK293
7
LNCaP clone FGC
7
NAMALWA cell
7
T47D
7
WI38
7
cerebellum
7
dermis lymphatic vessel endothelial cell
7
fibroblast of breast
7
hepatocyte
7
left cardiac atrium
7
left renal pelvis
7
limb
7
tibial artery
7
trophoblast
6
Brodmann (1909) area 46
6
GM06990
6
GM08714
6
GM12864
6
GM12865
6
GM12875
6
H1-hESC
6
HL-60
6
IMR-90
6
SK-N-MC
6
WERI-Rb-1
6
choroid plexus epithelial cell
6
esophagus
6
fibroblast cell line
6
foreskin melanocyte
6
kidney tubule cell
6
mammary epithelial cell
6
mucosa of rectum
6
skin fibroblast
6
vagina
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Caco-2 cell
5
Daoy
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM19238
5
GM19239
5
GM19240
5
GM23248
5
HAP-1
5
HT-29
5
HUES6
5
HUES64
5
KARPAS-422 cell
5
KBM-7
5
MG63
5
MM.1S
5
NB4
5
NT2-D1 cell
5
OCI-LY1
5
OCI-LY3
5
OCI-LY7
5
PC-3
5
PC-9
5
RPMI8226
5
RWPE1
5
SJSA1
5
SW480
5
ectodermal cell
5
endothelial cell of hepatic sinusoid
5
epithelial cell of proximal tubule
5
fibroblast of mammary gland
5
fibroblast of pulmonary artery
5
mature neutrophil
5
muscle layer of colon
5
muscle layer of duodenum
5
osteoblast
5
urinary bladder
4
A172
4
ACC112
4
ACHN
4
Ammon's horn
4
C4-2B
4
Caki2
4
DND-41
Life stage
4
embryonic
Date released
3
September, 2022
2
February, 2021
Software used
2
r
1
chromhmm
1
encode-ccres
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_type!
histone modifications
organ_slims!
musculature of body
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP