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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
108
monocyte
65
heart
65
stomach
60
HeLa-S3
57
kidney
51
brain
51
muscle of arm
50
lung
47
CD8-positive, alpha-beta T cell
47
small intestine
46
adrenal gland
44
placenta
43
H1-hESC
43
large intestine
43
muscle of leg
42
A549
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
36
thymus
35
neural progenitor cell
34
B cell
34
retina
34
right lung
33
K562
31
hematopoietic multipotent progenitor cell
31
liver
31
renal cortex interstitium
31
renal pelvis
31
right kidney
29
endothelial cell
28
fibroblast
27
CD14-positive monocyte
27
left kidney
25
spinal cord
25
spleen
24
heart left ventricle
23
CD4-positive, alpha-beta memory T cell
22
macrophage
22
smooth muscle cell
21
adipocyte
21
hepatocyte
21
pericyte cell
20
pigmented layer of retina
19
HFFc6
19
adipose tissue
18
MCF-7
17
T cell
17
foreskin keratinocyte
17
pancreas
17
sigmoid colon
17
trophoblast cell
16
natural killer cell
15
CD8-positive, alpha-beta memory T cell
15
H9
15
ovary
15
psoas muscle
15
regulatory T cell
14
astrocyte
14
gastrocnemius medialis
14
islet of Langerhans
14
keratinocyte
14
tibial nerve
14
transverse colon
13
GM12878
13
HepG2
13
body of pancreas
13
endothelial cell of umbilical vein
13
foreskin fibroblast
13
mesenchymal stem cell
13
mononuclear cell
13
pancreatic ductal cell
13
thyroid gland
12
CD4-positive, alpha-beta T cell
12
cardiac muscle cell
12
coronary artery
12
excitatory neuron
12
fibroblast of cardiac tissue
12
heart right ventricle
12
muscle of trunk
12
pancreatic beta cell
12
retinal pigment epithelial cell
11
EndoC_BH1
11
Peyer's patch
11
T-helper 1 cell
11
breast cancer cell
11
caudate nucleus
11
chorionic villus
11
testis
11
upper lobe of left lung
10
endocrine pancreas
10
fibroblast of lung
10
layer of hippocampus
10
pancreatic acinar cell
10
pancreatic alpha cell
10
right renal pelvis
10
skeletal muscle myoblast
10
skeletal muscle tissue
9
Rhabdomyosarcoma
9
T-helper 2 cell
9
left renal cortex interstitium
9
left renal pelvis
9
lymphocyte
9
mammary gland epithelial cell
9
neurosphere
9
osteoblast
9
pancreatic delta cell
9
skeletal muscle satellite cell
9
tibial artery
8
T-helper 17 cell
8
breast epithelium
8
gastric cancer cell
8
left cardiac atrium
8
mammary epithelial cell
8
pituitary stalk
8
right atrium auricular region
8
skin fibroblast
8
temporal lobe
7
22Rv1
7
B-lymphoblastoid cell line
7
CD4-positive helper T cell
7
aorta
7
bronchial epithelial cell
7
colonic mucosa
7
epithelial cell of prostate
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
fibroblast of dermis
7
kidney tubule cell
7
lower leg skin
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
neuroblastoma cell
7
neutrophil
7
omental fat pad
7
prostate gland
7
substantia nigra
7
thoracic aorta
7
trophoblast
6
Ammon's horn
6
Chondroid Chordoma
6
HAP-1
6
HEK293
6
HT-29
6
IMR-90
6
MM.1S
6
NAMALWA cell
6
OCI-LY7
6
PC-9
6
SGBS preadipocytes
6
SK-N-DZ
6
SK-N-SH
6
WI38
6
ascending aorta
6
choroid plexus epithelial cell
6
cingulate gyrus
6
colon epithelial cell
6
diffuse intrinsic pontine glioma
6
endometrium adenocarcinoma
6
erythroblast
6
esophagus
6
eye
6
immortal human breast epithelial cell line cell
6
mesendoderm
6
neuronal stem cell
6
parathyroid adenoma
6
tongue
5
cardiac fibroblast
5
CD1c-positive myeloid dendritic cell
5
CMK
5
CyT49
5
GM06990
5
GM12864
5
GM12865
5
GM18507
5
GM19240
5
GM23248
5
H7-hESC
5
HCT116
5
HL-60
5
HUES8
5
Jurkat
5
KARPAS-422 cell
5
LHCN-M2
5
LNCAP
5
LNCaP clone FGC
5
LoVo cell
5
MG63
5
PC-3
5
RWPE1
5
SW480
5
chorion membrane
5
dermis blood vessel endothelial cell
5
embryonic stem cell
5
enterocyte
5
frontal cortex
5
glomerular visceral epithelial cell
5
glutamatergic neuron
5
limb
5
mucosa of rectum
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
annotation_type!
meQTL
binding sites
Showing 1 of 1 results
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP