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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
1
target gene predictions
1
variant allelic effects
Annotation Category
1
Genetic variant effects
1
Target gene links
1
cis-regulatory elements
Annotation type Category
3
snATAC-seq
Available data
11
bed bed3+
8
bigWig
5
tsv
3
bigBed narrowPeak
1
bam
1
bed gappedPeak
1
xls
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
2
pancreatic polypeptide-secreting cell
1
pancreatic acinar cell
1
pancreatic ductal cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pancreatic stellate cell
Organ
3
epithelium
3
pancreas
Life stage
3
adult
Date released
2
February, 2021
1
February, 2024
Software used
1
cicero
1
deltasvm
1
macs
Lab
3
Kyle Gaulton, UCSD
Project
3
AMP
RFA
3
AMP
annotation_type!
pQTL
organ_slims!
mammary gland
Showing 3 of 3 results
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Download
FileSet
DSR014OEB
released
Annotation file set
: pancreatic alpha cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR884MOQ
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic alpha cell snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR593VJK
released
Annotation file set
: pancreatic alpha cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP