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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
binding sites
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
pCHi-C
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
1
hg18
1
hg19
Organism
2
Homo sapiens
Biosample type
2
cell line
Biosample term
32
neural progenitor cell
11
islet of Langerhans
8
H1-hESC
8
kidney
8
liver
7
hepatocyte
6
subcutaneous adipose tissue
4
Ammon's horn
4
cardiomyocytes (cardiac muscle cell)
4
cartilage tissue
4
endothelial cell
4
omental fat pad
3
C1 segment of cervical spinal cord
3
adipose tissue
3
amygdala
3
anterior cingulate cortex
3
aorta
3
ascending aorta
3
body of pancreas
3
caudate nucleus
3
cerebellum
3
cerebellum (Hemisphere)
3
coronary artery
3
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
3
frontal cortex
3
gastrocnemius medialis(Muscle - Skeletal)
3
heart right ventricle
3
hypothalamus
3
left ventricle myocardium
3
nucleus accumbens
3
psoas muscle
3
putamen
3
right atrium auricular region
3
right lobe of liver
3
substantia nigra
3
tibial artery
3
tibial nerve
2
HepG2
2
blood
2
cardiac precursors (cardiac muscle cell)
2
heart
2
heart left ventricle
2
kidney distal convoluted tubule epithelial cell
2
pancreas
2
renal principal cell
2
right cardiac atrium
1
B-1 B cell
1
B-2 B cell
1
B-lymphoblastoid cell line
1
CD8-positive, alpha-beta T cell
1
EndoC_BH1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
T-helper 17 cell
1
adrenal gland
1
alternatively activated macrophage
1
aortic valve
1
bladder (urinary bladder)
1
cerebrospinal fluid
1
dendritic cell
1
dorsolateral prefrontal cortex
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
esophagus
1
fibroblast cell line
1
gastric (mucosa of stomach)
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
inflammatory macrophage
1
kidney connecting tubule epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
left cardiac atrium
1
lung
1
lymphocyte of B lineage (iPSC)
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mesenchymal stem cell
1
mesendoderm
1
mitral valve
1
natural killer cell
1
ovary
1
progenitor cell
1
proximal tubule cells with injury markers
1
pulmonary valve
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal intercalated cell
1
sigmoid colon
1
skeletal muscle tissue
1
small intestine
1
spleen
1
synovial joint
1
thymus
1
tricuspid valve
1
trophoblast
1
white adipose cell
Organ
2
liver
Date released
7
September, 2022
4
February, 2021
1
August, 2017
1
August, 2021
1
June, 2020
1
March, 2020
1
May, 2021
1
October, 2022
Software used
1
chicago
1
cisgenome
1
e-range
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
annotation_type!
representative DNase hypersensitivity sites
Showing 2 of 2 results
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Download
FileSet
DSR366OIY
released
Annotation file set
: Binding sites of ChREBP, TF for liver lipogenesis, in HepG2 cells(PMID:21811631)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR499URQ
released
Annotation file set
: A target gene prediction annotation in HepG2 of DSR452PKJ pCHi-C E-MTAB-7144
Lab:
AMP-T2D consortium
Project:
AMP