Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1667
candidate regulatory elements
target gene predictions
977
histone modifications
944
chromatin state
912
accessible chromatin
817
binding sites
682
gene expression
169
eQTL
167
differential activity
140
variant allelic effects
74
Fine-mapped variants
13
caQTL
4
hQTL
4
sQTL
4
variant to gene
3
pQTL
2
meQTL
2
other
1
representative DNase hypersensitivity sites
Annotation Category
7
Genetic variant effects
Annotation type Category
4
ChIP-seq
3
quantitative proteomics
Available data
4
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
4
primary cell
3
tissue
Biosample term
2
cartilage tissue
2
monocyte
2
neutrophil
1
cerebrospinal fluid
naive thymus-derived CD4-positive, alpha-beta T cell
Organ
2
connective tissue
1
bodily fluid
Life stage
7
adult
Date released
4
May, 2021
3
August, 2021
Software used
4
limix
4
macs
2
fastqtl
2
peer
1
r
Lab
5
AMP-T2D consortium
2
ITG
Project
5
AMP
2
ITG
RFA
5
AMP
2
ITG
annotation_type!
target gene predictions
biosample_term_name!
naive thymus-derived CD4-positive, alpha-beta T cell
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR561OLH
released
Annotation file set
: pQTLs from CSF levels of 1,126 proteins in 133 subjects by performing a genome-wide association analysis of 514,227 SNPs
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR524ZAH
released
Annotation file set
: pQTL of low-grade (intact; preserved) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR651XSZ
released
Annotation file set
: pQTL of high grade (highly degraded; lesioned) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR804HBZ
released
Annotation file set
: histone quantitative trait loci (hQTL) from H3K4me1 ChIP-seq of BLUEPRINT epigenome project of human immune cell types (CD16+ neutrophils) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR650UBZ
released
Annotation file set
: histone quantitative trait loci (hQTL) from H3K4me1 ChIP-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR676ZHI
released
Annotation file set
: histone quantitative trait loci (hQTL) from H3K27ac ChIP-seq of BLUEPRINT epigenome project of human immune cell types (CD16+ neutrophils) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR930EID
released
Annotation file set
: histone quantitative trait loci (hQTL) from H3K27ac ChIP-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP