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Schema
Citing CMDGA
Clear Filters
Annotation type
target gene predictions
2
binding sites
2
chromatin state
1
accessible chromatin
1
candidate regulatory elements
1
histone modifications
Annotation Category
7
cis-regulatory elements
Annotation type Category
6
ChIP-seq
2
DNase-seq
Available data
6
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
6
cell line
1
stem cell
Biosample term
109
monocyte
67
heart
63
stomach
60
kidney
54
brain
51
muscle of arm
49
lung
45
small intestine
44
muscle of leg
44
placenta
43
A549
43
CD8-positive, alpha-beta T cell
43
adrenal gland
42
large intestine
41
muscle of back
40
common myeloid progenitor, CD34-positive
39
left lung
38
neural progenitor cell
35
liver
35
retina
34
right lung
34
thymus
32
B cell
32
hematopoietic multipotent progenitor cell
31
renal cortex interstitium
31
renal pelvis
31
right kidney
27
left kidney
26
spinal cord
25
fibroblast
25
heart left ventricle
24
islet of Langerhans
23
CD4-positive, alpha-beta memory T cell
23
endothelial cell
23
spleen
20
adipose tissue
20
breast cancer cell
20
hepatocyte
20
pigmented layer of retina
19
MCF-7
19
adipocyte
19
tibial nerve
18
K562
18
foreskin keratinocyte
18
macrophage
17
T cell
16
body of pancreas
16
caudate nucleus
16
foreskin fibroblast
16
keratinocyte
16
sigmoid colon
16
smooth muscle cell
15
CD8-positive, alpha-beta memory T cell
15
cardiac muscle cell
15
coronary artery
15
embryonic stem cell
15
pancreas
15
retinal pigment epithelial cell
15
trophoblast cell
14
endothelial cell of umbilical vein
14
mesenchymal stem cell
14
natural killer cell
14
regulatory T cell
14
right atrium auricular region
14
tibial artery
HepG2
13
gastrocnemius medialis
13
heart right ventricle
13
mononuclear cell
13
subcutaneous adipose tissue
13
substantia nigra
13
upper lobe of left lung
12
CD14-positive monocyte
12
CD4-positive, alpha-beta T cell
12
excitatory neuron
12
neuroblastoma cell
12
omental fat pad
12
osteoblast
12
pericyte cell
12
psoas muscle
12
skeletal muscle myoblast
12
skeletal muscle tissue
12
testis
12
thyroid gland
11
EndoC_BH1
11
ascending aorta
11
bronchial epithelial cell
11
endothelial cell of hepatic sinusoid
11
fibroblast of cardiac tissue
11
fibroblast of lung
11
mammary epithelial cell
11
mammary gland epithelial cell
11
ovary
11
pancreatic ductal cell
11
transverse colon
10
Rhabdomyosarcoma
10
astrocyte
10
cerebellum
10
chorionic villus
10
frontal cortex
10
gastric cancer cell
10
layer of hippocampus
10
muscle of trunk
10
neutrophil
10
putamen
10
skeletal muscle satellite cell
10
temporal lobe
9
Ammon's horn
9
HeLa-S3
9
Peyer's patch
9
T-helper 1 cell
9
T-helper 17 cell
9
choroid plexus epithelial cell
9
diffuse intrinsic pontine glioma
9
endocrine pancreas
9
left cardiac atrium
9
left renal pelvis
9
liposarcoma
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
neuronal stem cell
9
neurosphere
9
pancreatic beta cell
9
prostate gland
8
22Rv1
8
GM12878
8
H9
8
HEK293
8
SK-N-DZ
8
T-helper 2 cell
8
esophagus squamous epithelium
8
fibroblast of dermis
8
left renal cortex interstitium
8
pancreatic acinar cell
8
right renal pelvis
8
skeletal muscle fiber
7
B-lymphoblastoid cell line
7
GM06990
7
GM12864
7
GM12865
7
H1-hESC
7
IMR-90
7
aorta
7
breast epithelium
7
colonic mucosa
7
epithelial cell of prostate
7
erythroblast
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
fibroblast cell line
7
hepatic stellate cell
7
kidney tubule cell
7
mature neutrophil
7
right lobe of liver
7
thoracic aorta
7
tongue
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12875
6
GM19240
6
GM23248
6
HL-60
6
HT-29
6
KARPAS-422 cell
6
SW480
6
angular gyrus
6
chondrocyte
6
cingulate gyrus
6
dermis blood vessel endothelial cell
6
duodenal mucosa
6
endodermal cell
6
fibroblast of villous mesenchyme
6
foreskin melanocyte
6
globus pallidus
6
hESC cell
6
lower leg skin
6
mesodermal cell
6
midbrain
6
neuroblastoma cell line
6
pancreatic alpha cell
6
right renal cortex interstitium
6
skin fibroblast
6
trophoblast
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
Organ
7
embryo
Life stage
3
embryonic
Date released
2
February, 2021
2
September, 2022
1
August, 2017
1
June, 2020
1
October, 2022
Software used
3
chromhmm
3
macs
1
r
Lab
6
AMP-T2D consortium
1
Stephen Parker, UMich
Project
7
AMP
RFA
7
AMP
annotation_type!
target gene predictions
biosample_term_name!
HepG2
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR876GWY
released
Annotation file set
: Binding sites annotation for H1-hESC (H1-hESC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR702NFK
released
Annotation file set
: Candidate regulatory elements for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR416QNM
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188ZAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR165RXW
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP