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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
2
chromatin state
1
candidate regulatory elements
1
histone modifications
target gene predictions
Annotation Category
6
cis-regulatory elements
Annotation type Category
8
RNA-seq
6
ChIP-seq
2
DNase-seq
Available data
5
bed bed3+
1
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
5
cell line
1
stem cell
Biosample term
89
monocyte
60
heart
60
stomach
51
brain
49
lung
49
muscle of arm
48
kidney
44
small intestine
43
placenta
42
A549
42
adrenal gland
42
muscle of leg
41
large intestine
41
muscle of back
40
common myeloid progenitor, CD34-positive
39
left lung
38
CD8-positive, alpha-beta T cell
33
right lung
33
thymus
31
hematopoietic multipotent progenitor cell
30
right kidney
29
neural progenitor cell
29
renal cortex interstitium
28
renal pelvis
27
left kidney
25
liver
24
B cell
24
spinal cord
23
CD4-positive, alpha-beta memory T cell
22
spleen
20
breast cancer cell
20
heart left ventricle
19
MCF-7
17
K562
17
foreskin keratinocyte
15
CD8-positive, alpha-beta memory T cell
15
sigmoid colon
14
foreskin fibroblast
14
trophoblast cell
13
adipose tissue
13
mononuclear cell
12
CD14-positive monocyte
12
HepG2
12
endothelial cell of umbilical vein
12
keratinocyte
12
neuroblastoma cell
12
upper lobe of left lung
11
CD4-positive, alpha-beta T cell
11
adipocyte
11
fibroblast of lung
11
gastrocnemius medialis
11
testis
11
thyroid gland
10
Peyer's patch
10
bronchial epithelial cell
10
cardiac muscle cell
10
chorionic villus
10
gastric cancer cell
10
layer of hippocampus
10
mammary epithelial cell
10
muscle of trunk
10
ovary
10
psoas muscle
10
regulatory T cell
10
skeletal muscle myoblast
10
skeletal muscle tissue
10
temporal lobe
9
HeLa-S3
9
Rhabdomyosarcoma
9
body of pancreas
9
caudate nucleus
9
diffuse intrinsic pontine glioma
9
endocrine pancreas
9
heart right ventricle
9
hepatocyte
9
liposarcoma
9
mammary gland epithelial cell
9
neurosphere
9
retina
9
substantia nigra
9
transverse colon
8
22Rv1
8
H9
8
fibroblast of dermis
8
natural killer cell
8
neuronal stem cell
8
neutrophil
8
osteoblast
8
prostate gland
8
tibial nerve
7
B-lymphoblastoid cell line
7
GM12878
7
HEK293
7
SK-N-DZ
7
T cell
7
T-helper 17 cell
7
T-helper 2 cell
7
aorta
7
colonic mucosa
7
embryonic stem cell
7
esophageal adenocarcinoma
7
esophagus squamous epithelium
7
fibroblast cell line
7
fibroblast of cardiac tissue
7
mature neutrophil
7
mesenchymal stem cell
7
pancreas
7
right renal pelvis
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
GM12875
6
H1-hESC
6
HL-60
6
IMR-90
6
NAMALWA cell
6
SK-N-MC
6
SK-N-SH
6
T-helper 1 cell
6
angular gyrus
6
cerebellum
6
cingulate gyrus
6
dermis blood vessel endothelial cell
6
duodenal mucosa
6
endodermal cell
6
epithelial cell of prostate
6
foreskin melanocyte
6
hESC cell
6
left cardiac atrium
6
left renal cortex interstitium
6
lower leg skin
6
mesodermal cell
6
neuroblastoma cell line
6
omental fat pad
6
right renal cortex interstitium
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Caco-2 cell
5
Ewing sarcoma
5
GM08714
5
GM12891
5
GM12892
5
GM19238
5
GM19239
5
GM19240
5
GM23248
5
HAP-1
5
HT-29
5
KARPAS-422 cell
5
LHCN-M2
5
LNCaP clone FGC
5
MG63
5
MM.1S
5
OCI-LY1
5
OCI-LY7
5
PC-3
5
RWPE1
5
SW480
5
T-cell acute lymphoblastic leukemia
5
T47D
5
ascending aorta
5
breast epithelium
5
coronary artery
5
dermis lymphatic vessel endothelial cell
5
esophagus
5
esophagus muscularis mucosa
5
fibroblast of breast
5
immortal human breast epithelial cell line cell
5
left renal pelvis
5
muscle layer of duodenum
5
myoepithelial cell of mammary gland
5
osteosarcoma
5
parathyroid adenoma
5
prostate cancer cell line
5
stomach smooth muscle
5
thoracic aorta
5
tongue
4
Brodmann (1909) area 46
4
Daoy
4
GM10248
4
GM10266
4
GM12873
4
HK-2 cell
4
HS-SY-2 cell
4
HUES6
4
HUES64
4
HuH-7
4
Jurkat
4
KBM-7
4
LNCAP
4
LoVo cell
Organ
6
embryo
Life stage
3
embryonic
Date released
2
February, 2021
2
September, 2022
1
August, 2017
1
October, 2022
Software used
3
chromhmm
2
macs
1
r
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
6
AMP
annotation_type!
target gene predictions
biosample_term_name!
cardiomyocytes
Showing 6 of 6 results
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Download
FileSet
DSR876GWY
released
Annotation file set
: Binding sites annotation for H1-hESC (H1-hESC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR702NFK
released
Annotation file set
: Candidate regulatory elements for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR416QNM
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188ZAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP