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Schema
Citing CMDGA
Clear Filters
Annotation type
target gene predictions
2
binding sites
2
chromatin state
1
accessible chromatin
1
candidate regulatory elements
1
histone modifications
Annotation Category
Gene expression levels
7
cis-regulatory elements
Annotation type Category
6
ChIP-seq
2
DNase-seq
Available data
6
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
6
cell line
1
stem cell
Biosample term
113
monocyte
67
heart
64
stomach
60
kidney
56
brain
51
muscle of arm
50
lung
46
small intestine
45
placenta
44
adrenal gland
44
muscle of leg
43
A549
43
CD8-positive, alpha-beta T cell
42
large intestine
41
muscle of back
40
common myeloid progenitor, CD34-positive
39
left lung
39
neural progenitor cell
37
liver
36
retina
34
right lung
34
thymus
33
islet of Langerhans
32
B cell
32
hematopoietic multipotent progenitor cell
32
right kidney
31
renal cortex interstitium
31
renal pelvis
27
fibroblast
27
left kidney
27
spinal cord
26
heart left ventricle
26
macrophage
24
spleen
23
CD4-positive, alpha-beta memory T cell
23
endothelial cell
21
adipose tissue
20
breast cancer cell
20
hepatocyte
20
pigmented layer of retina
20
tibial nerve
19
MCF-7
18
K562
18
T cell
18
adipocyte
18
caudate nucleus
18
foreskin keratinocyte
16
body of pancreas
16
coronary artery
16
embryonic stem cell
16
foreskin fibroblast
16
keratinocyte
16
pancreas
16
regulatory T cell
16
sigmoid colon
15
CD8-positive, alpha-beta memory T cell
15
cardiac muscle cell
15
endothelial cell of umbilical vein
15
natural killer cell
15
retinal pigment epithelial cell
15
right atrium auricular region
15
smooth muscle cell
15
subcutaneous adipose tissue
15
trophoblast cell
14
HepG2
14
substantia nigra
14
tibial artery
13
gastrocnemius medialis
13
heart right ventricle
13
mesenchymal stem cell
13
mononuclear cell
13
omental fat pad
13
putamen
13
skeletal muscle myoblast
13
testis
13
thyroid gland
13
upper lobe of left lung
12
CD14-positive monocyte
12
CD4-positive, alpha-beta T cell
12
excitatory neuron
12
layer of hippocampus
12
lymphoblastoid cell line
12
neuroblastoma cell
12
osteoblast
12
ovary
12
pericyte cell
12
psoas muscle
12
skeletal muscle tissue
12
transverse colon
11
EndoC_BH1
11
T-helper 1 cell
11
ascending aorta
11
bronchial epithelial cell
11
cerebellum
11
endothelial cell of hepatic sinusoid
11
fibroblast of cardiac tissue
11
fibroblast of lung
11
frontal cortex
11
mammary epithelial cell
11
mammary gland epithelial cell
11
neutrophil
11
pancreatic ductal cell
11
prostate gland
10
Rhabdomyosarcoma
10
T-helper 17 cell
10
astrocyte
10
chorionic villus
gastric cancer cell
10
muscle of trunk
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
temporal lobe
9
Ammon's horn
9
HeLa-S3
9
Peyer's patch
9
T-helper 2 cell
9
choroid plexus epithelial cell
9
diffuse intrinsic pontine glioma
9
endocrine pancreas
9
esophagus muscularis mucosa
9
left cardiac atrium
9
left renal cortex interstitium
9
left renal pelvis
9
liposarcoma
9
neuronal stem cell
9
neurosphere
9
pancreatic beta cell
8
22Rv1
8
GM12878
8
H9
8
HEK293
8
SK-N-DZ
8
esophagus squamous epithelium
8
fibroblast of dermis
8
pancreatic acinar cell
8
right renal pelvis
8
skeletal muscle satellite cell
7
B-lymphoblastoid cell line
7
GM06990
7
GM12864
7
GM12865
7
H1-hESC
7
IMR-90
7
aorta
7
breast epithelium
7
colonic mucosa
7
epithelial cell of prostate
7
erythroblast
7
esophageal adenocarcinoma
7
fibroblast cell line
7
hepatic stellate cell
7
kidney tubule cell
7
mature neutrophil
7
right lobe of liver
7
right renal cortex interstitium
7
thoracic aorta
7
tongue
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12875
6
GM19240
6
GM23248
6
HL-60
6
HT-29
6
SW480
6
angular gyrus
6
chondrocyte
6
cingulate gyrus
6
dermis blood vessel endothelial cell
6
duodenal mucosa
6
endodermal cell
6
esophagus
6
fibroblast of villous mesenchyme
6
foreskin melanocyte
6
globus pallidus
6
hESC cell
6
lower leg skin
6
mesodermal cell
6
midbrain
6
neuroblastoma cell line
6
pancreatic alpha cell
6
skin fibroblast
6
trophoblast
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
Organ
7
embryo
Life stage
3
embryonic
Date released
2
February, 2021
2
September, 2022
1
August, 2017
1
June, 2020
1
October, 2022
Software used
3
chromhmm
3
macs
1
r
Lab
6
AMP-T2D consortium
1
Stephen Parker, UMich
Project
7
AMP
RFA
7
AMP
annotation_type!
target gene predictions
biosample_term_name!
gastric cancer cell
annotation_category!
Gene expression levels
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR876GWY
released
Annotation file set
: Binding sites annotation for H1-hESC (H1-hESC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR702NFK
released
Annotation file set
: Candidate regulatory elements for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR416QNM
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188ZAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR165RXW
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP