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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
gene expression
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Gene expression levels
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
RNA-seq
Available data
2
bed bed3+
1
bed bed9
1
bigWig
1
tsv
File set status
4
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
102
monocyte
39
A549
30
common myeloid progenitor, CD34-positive
26
hematopoietic multipotent progenitor cell
23
retina
20
pigmented layer of retina
19
CD8-positive, alpha-beta T cell
19
adrenal gland
19
liver
18
adipose tissue
18
body of pancreas
18
hepatocyte
18
tibial nerve
17
B cell
17
stomach
17
subcutaneous adipose tissue
16
epithelial cell of proximal tubule
16
islet of Langerhans
16
omental fat pad
16
spleen
15
caudate nucleus
14
MCF-7
14
endothelial cell of hepatic sinusoid
13
K562
13
ascending aorta
13
glomerular endothelial cell
12
coronary artery
12
gastrocnemius medialis
12
heart left ventricle
12
right atrium auricular region
12
sigmoid colon
12
substantia nigra
12
thyroid gland
12
tibial artery
12
transverse colon
11
cerebellum
11
natural killer cell
11
pancreas
10
CD8-positive, alpha-beta memory T cell
10
Peyer's patch
10
T-helper 1 cell
10
frontal cortex
10
mononuclear cell
10
ovary
10
putamen
10
regulatory T cell
10
upper lobe of left lung
9
Ammon's horn
9
CD14-positive monocyte
9
endocrine pancreas
9
endothelial cell
9
layer of hippocampus
9
temporal lobe
8
CD4-positive, alpha-beta T cell
8
HeLa-S3
8
angular gyrus
8
aorta
8
esophagus squamous epithelium
8
lower leg skin
8
psoas muscle
8
right lobe of liver
7
T cell
7
breast epithelium
7
esophagus muscularis mucosa
7
kidney
7
kidney loop of Henle thin ascending limb epithelial cell
7
kidney tubule cell
7
parathyroid adenoma
7
skeletal muscle tissue
7
testis
7
thoracic aorta
7
vagina
6
CD4-positive, alpha-beta memory T cell
6
cingulate gyrus
6
colonic mucosa
6
duodenal mucosa
6
endometrium adenocarcinoma
6
esophagus
6
fibroblast of breast
6
gastroesophageal sphincter
6
immortal human breast epithelial cell line cell
6
kidney glomerular epithelial cell
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
prostate gland
6
small intestine
6
stomach smooth muscle
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
LNCaP clone FGC
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T-helper 2 cell
5
T47D
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
amygdala
5
anterior cingulate cortex
5
cerebellum (Hemisphere)
5
gastrocnemius medialis(Muscle - Skeletal)
5
globus pallidus
5
glomerular visceral epithelial cell
5
hepatic stellate cell
5
hypothalamus
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
lung
5
mature neutrophil
5
middle frontal gyrus
5
neutrophil
5
nucleus accumbens
5
right cardiac atrium
5
skeletal muscle satellite cell
5
subcutaneous abdominal adipose tissue
5
uterus
4
Brodmann (1909) area 46
4
GM12878
4
T-helper 17 cell
4
adipocyte
4
bone tissue
4
cartilage tissue
4
cerebellar cortex
4
dermis blood vessel endothelial cell
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
fibroblast of lung
4
glutamatergic neuron
4
heart
4
inflammatory macrophage
4
kidney connecting tubule epithelial cell
4
kidney interstitial cell
4
mammary gland epithelial cell
4
medulla oblongata
4
mesenchymal stem cell
4
midbrain
4
muscle cell
4
naive T cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
peripheral blood mononuclear cell
4
pons
4
skeletal muscle myoblast
4
superior temporal gyrus
3
A172
3
ACC112
3
ACHN
Organ
4
heart
Life stage
54
embryonic
4
adult
3
child
3
fetal
1
young adult
Date released
2
September, 2022
1
February, 2021
1
January, 2020
Software used
2
r
1
chromhmm
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type!
target gene predictions
Showing 4 of 4 results
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Download
FileSet
DSR853SVT
released
Annotation file set
: Candidate regulatory elements for BSS00514 heart from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR821WIY
released
Annotation file set
: Chromatin states for BSS00514 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR384FIT
released
Annotation file set
: Gene expression of heart (atria and ventricle)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR994QRK
released
Annotation file set
: Accessible chromatin annotation of heart adult from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP