Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
9
hg19
GRCh38
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
stem cell
Biosample term
66
stomach
64
heart
55
kidney
51
brain
51
lung
49
CD8-positive, alpha-beta T cell
49
muscle of arm
47
adrenal gland
47
small intestine
45
placenta
44
A549
43
large intestine
42
muscle of leg
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
39
liver
37
thymus
36
islet of Langerhans
34
retina
34
right lung
33
B cell
33
hematopoietic multipotent progenitor cell
31
monocyte
30
right kidney
29
renal cortex interstitium
29
renal pelvis
27
CD14-positive monocyte
27
left kidney
27
spinal cord
25
spleen
24
neural progenitor cell
23
CD4-positive, alpha-beta memory T cell
23
adipose tissue
23
regulatory T cell
21
EndoC_BH1
21
MCF-7
21
adipocyte
20
breast cancer cell
20
endothelial cell
20
epithelial cell of proximal tubule
20
pigmented layer of retina
19
K562
19
heart left ventricle
19
natural killer cell
18
T-helper 1 cell
18
embryonic stem cell
18
foreskin keratinocyte
18
glomerular endothelial cell
18
pancreatic ductal cell
17
T-helper 17 cell
17
foreskin fibroblast
17
sigmoid colon
17
trophoblast cell
16
H1-hESC
16
hepatocyte
16
induced pluripotent stem cell
16
ovary
15
CD8-positive, alpha-beta memory T cell
15
mesenchymal stem cell
15
psoas muscle
14
body of pancreas
14
gastrocnemius medialis
14
keratinocyte
14
mononuclear cell
14
transverse colon
13
CD4-positive, alpha-beta T cell
13
endothelial cell of umbilical vein
13
pancreatic alpha cell
13
skeletal muscle tissue
13
testis
13
thyroid gland
13
upper lobe of left lung
12
T-helper 2 cell
12
fibroblast of lung
12
heart right ventricle
12
layer of hippocampus
12
mammary epithelial cell
12
muscle of trunk
12
neuroblastoma cell
12
neutrophil
12
osteoblast
12
pancreas
12
pancreatic beta cell
12
pancreatic delta cell
12
retinal pigment epithelial cell
12
skeletal muscle myoblast
12
subcutaneous adipose tissue
11
cardiac muscle cell
11
chorionic villus
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
tibial nerve
10
HeLa-S3
10
Peyer's patch
10
Rhabdomyosarcoma
10
T cell
10
bronchial epithelial cell
10
caudate nucleus
10
endocrine pancreas
10
fibroblast of cardiac tissue
10
gastric cancer cell
10
neuronal stem cell
10
progenitor cell of endocrine pancreas
10
prostate gland
9
GM12878
9
H9
9
HepG2
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
fibroblast of dermis
9
glomerular visceral epithelial cell
9
liposarcoma
9
mammary gland epithelial cell
9
neurosphere
9
pancreatic acinar cell
8
22Rv1
8
B-lymphoblastoid cell line
8
HEK293
8
aorta
8
breast epithelium
8
fibroblast cell line
8
macrophage
8
omental fat pad
8
pituitary stalk
8
temporal lobe
8
trophoblast
7
GM06990
7
GM12865
7
HT-29
7
colonic mucosa
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
left renal cortex interstitium
7
lower leg skin
7
mature neutrophil
7
mesendoderm
7
right atrium auricular region
7
right renal pelvis
7
smooth muscle cell
7
substantia nigra
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
Ammon's horn
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12864
6
HAP-1
6
IMR-90
6
Jurkat
6
LNCAP
6
NAMALWA cell
6
SK-N-MC
6
cardiomyocytes (cardiac muscle cell)
6
cerebellum
6
chondrocyte
6
cingulate gyrus
6
coronary artery
6
endometrium adenocarcinoma
6
eye
6
fibroblast of pulmonary artery
6
hESC cell
6
immortal human breast epithelial cell line cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
pancreatic stellate cell
6
parathyroid adenoma
6
skeletal muscle satellite cell
6
skin fibroblast
6
tibial artery
6
tongue
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Daoy
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
Life stage
3
embryonic
Date released
3
February, 2021
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
annotation_type!
variant allelic effects
assembly!
GRCh38
organ_slims!
esophagus
Showing 8 of 8 results
table-tab-icon
matrix-icon
Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP