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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
candidate regulatory elements
2
binding sites
1
accessible chromatin
1
histone modifications
1
target gene predictions
Annotation Category
7
cis-regulatory elements
1
Target gene links
Annotation type Category
6
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
8
cell line
Biosample term
131
monocyte
55
HeLa-S3
51
CD8-positive, alpha-beta T cell
51
H1-hESC
43
islet of Langerhans
39
endothelial cell
39
neural progenitor cell
38
kidney
31
heart
30
retina
29
hepatocyte
29
macrophage
29
stomach
27
liver
25
fibroblast
24
brain
24
pancreatic ductal cell
23
K562
22
EndoC_BH1
20
B cell
20
adrenal gland
20
breast cancer cell
20
lung
20
pigmented layer of retina
20
smooth muscle cell
20
subcutaneous adipose tissue
19
CD14-positive monocyte
19
HFFc6
19
epithelial cell of proximal tubule
19
muscle of leg
19
pericyte cell
18
adipocyte
18
embryonic stem cell
18
muscle of arm
18
placenta
18
regulatory T cell
18
small intestine
17
glomerular endothelial cell
17
large intestine
16
endothelial cell of hepatic sinusoid
16
heart left ventricle
16
induced pluripotent stem cell
16
pancreatic acinar cell
16
pancreatic beta cell
16
spleen
15
CD4-positive, alpha-beta T cell
15
common myeloid progenitor, CD34-positive
15
muscle of back
14
T-helper 1 cell
14
astrocyte
14
keratinocyte
14
pancreas
14
pancreatic alpha cell
14
spinal cord
14
thymus
14
tibial nerve
13
GM12878
13
H9
13
excitatory neuron
13
hematopoietic multipotent progenitor cell
13
left lung
13
natural killer cell
13
osteoblast
13
retinal pigment epithelial cell
12
cardiac muscle cell
12
caudate nucleus
12
coronary artery
12
endothelial cell of umbilical vein
12
foreskin fibroblast
12
lymphoblastoid cell line
12
mammary epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
renal pelvis
12
right lung
12
substantia nigra
11
T-helper 17 cell
11
adipose tissue
11
erythroblast
11
mesenchymal stem cell
11
omental fat pad
11
pancreatic delta cell
11
renal cortex interstitium
10
MCF-7
10
Rhabdomyosarcoma
10
body of pancreas
10
gastric cancer cell
10
neuronal stem cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
putamen
10
skeletal muscle satellite cell
9
Ammon's horn
9
HepG2
9
T cell
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
frontal cortex
9
liposarcoma
9
ovary
9
right atrium auricular region
9
right kidney
9
skeletal muscle myoblast
9
testis
9
tibial artery
8
A549
8
B-lymphoblastoid cell line
8
fibroblast cell line
8
foreskin keratinocyte
8
glomerular visceral epithelial cell
8
heart right ventricle
8
neutrophil
8
pituitary stalk
7
CD4-positive helper T cell
7
Jurkat
7
amygdala
7
cerebellum
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
left cardiac atrium
7
mature neutrophil
7
memory B cell
7
temporal lobe
6
Chondroid Chordoma
6
HEK293
6
HUES8
6
IMR-90
6
LNCAP
6
anterior cingulate cortex
6
aorta
6
ascending aorta
6
bronchial epithelial cell
6
cardiomyocytes (cardiac muscle cell)
6
chondrocyte
6
fibroblast of cardiac tissue
6
fibroblast of lung
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
left kidney
6
lymphocyte
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
nucleus accumbens
6
plasma cell
6
sigmoid colon
6
skeletal muscle fiber
6
smooth muscle cell of the coronary artery
6
trophoblast cell
6
type I muscle cell
6
upper lobe of left lung
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta memory T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM06990
5
GM12864
5
GM12865
5
GM19240
5
Glomerular Capillary Endothelial Cell
5
HAP-1
5
HCT-116 cell
5
KARPAS-422 cell
5
Non-Classical Monocyte
5
PC-9
5
SGBS preadipocytes
5
T-helper 2 cell
5
acute myeloid leukemia
5
cardiac precursors (cardiac muscle cell)
5
glutamatergic neuron
5
hepatic stellate cell
Organ
8
lung
Life stage
3
adult
Date released
September, 2022
5
February, 2021
1
June, 2020
1
May, 2021
1
October, 2022
Software used
3
encode-ccres
3
macs
1
abc
1
chromhmm
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
annotation_type!
variant allelic effects
month_released!
September, 2022
Showing 8 of 8 results
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Download
FileSet
DSR259UTD
released
Annotation file set
: Binding sites annotation for A549 (A549) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR641NTB
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE A549
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR496BBN
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE A549
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR885NAO
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE A549
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR761KYR
released
Annotation file set
: Histone modifications annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR378GKW
released
Annotation file set
: Binding sites annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR510YWQ
released
Annotation file set
: enhancer-gene predicton of A549_treated_with_ethanol_0.02_percent_for_1_hour-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR008HJP
released
Annotation file set
: Accessible chromatin annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP