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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
chromatin state
Annotation Category
3
Target gene links
3
cis-regulatory elements
Annotation type Category
4
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
1
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
stem cell
Biosample term
82
stomach
81
heart
68
lung
67
kidney
66
brain
65
muscle of arm
64
HeLa-S3
62
small intestine
61
adrenal gland
59
A549
56
muscle of leg
56
placenta
54
common myeloid progenitor, CD34-positive
54
large intestine
54
muscle of back
52
left lung
51
H1-hESC
45
thymus
44
right lung
42
liver
41
right kidney
40
hematopoietic multipotent progenitor cell
38
K562
38
renal cortex interstitium
37
B cell
37
islet of Langerhans
37
renal pelvis
36
left kidney
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
spinal cord
30
spleen
28
adipose tissue
28
heart left ventricle
26
monocyte
23
body of pancreas
23
regulatory T cell
22
CD8-positive, alpha-beta memory T cell
22
T-helper 1 cell
22
sigmoid colon
21
MCF-7
21
T-helper 17 cell
21
epithelial cell of proximal tubule
21
hepatocyte
21
neural progenitor cell
21
trophoblast cell
20
endothelial cell
20
tibial nerve
19
HFFc6
19
foreskin keratinocyte
19
mononuclear cell
19
natural killer cell
19
ovary
19
psoas muscle
18
CD8-positive, alpha-beta T cell
18
adipocyte
18
caudate nucleus
18
glomerular endothelial cell
17
T-helper 2 cell
17
muscle of trunk
17
subcutaneous adipose tissue
17
substantia nigra
17
thyroid gland
17
transverse colon
16
H9
16
chorionic villus
16
endothelial cell of umbilical vein
16
fibroblast of lung
16
gastrocnemius medialis
16
heart right ventricle
16
induced pluripotent stem cell
16
omental fat pad
15
T cell
15
coronary artery
15
skeletal muscle tissue
14
CD4-positive, alpha-beta T cell
14
ascending aorta
14
cerebellum
14
endocrine pancreas
14
macrophage
14
mesenchymal stem cell
14
right atrium auricular region
14
testis
13
GM12878
13
Peyer's patch
13
aorta
13
foreskin fibroblast
13
layer of hippocampus
13
neurosphere
13
neutrophil
13
retina
13
smooth muscle cell
13
tibial artery
12
EndoC_BH1
12
fibroblast of dermis
12
pancreas
12
pancreatic ductal cell
12
temporal lobe
12
upper lobe of left lung
11
frontal cortex
11
left renal cortex interstitium
11
pericyte cell
11
skeletal muscle myoblast
10
Ammon's horn
10
SK-N-SH
10
cardiomyocytes
10
fibroblast of cardiac tissue
10
mammary gland epithelial cell
9
HepG2
9
angular gyrus
9
breast epithelium
9
cardiac muscle cell
9
colonic mucosa
9
esophagus
9
esophagus squamous epithelium
9
keratinocyte
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
parathyroid adenoma
9
putamen
9
right renal cortex interstitium
9
vagina
8
22Rv1
8
SK-N-DZ
8
bronchial epithelial cell
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
epithelial cell of prostate
8
esophagus muscularis mucosa
8
immortal human breast epithelial cell line cell
8
left cardiac atrium
8
lower leg skin
8
lymphocyte
8
myoepithelial cell of mammary gland
8
naive T cell
8
pancreatic beta cell
8
pancreatic delta cell
8
pituitary stalk
8
progenitor cell of endocrine pancreas
8
prostate gland
8
right renal pelvis
8
skeletal muscle satellite cell
8
thoracic aorta
8
tongue
7
LNCaP clone FGC
7
T47D
7
WI38
7
embryonic stem cell
7
endometrium adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
glomerular visceral epithelial cell
7
kidney tubule cell
7
left renal pelvis
7
limb
7
pancreatic acinar cell
7
right lobe of liver
7
stomach smooth muscle
7
trophoblast
6
Brodmann (1909) area 46
6
HCT116
6
HEK293
6
IMR-90
6
NAMALWA cell
6
T-cell
6
alternatively activated macrophage
6
amygdala
6
anterior cingulate cortex
6
astrocyte
6
cardiomyocytes (cardiac muscle cell)
6
chorion membrane
6
fibroblast of breast
6
lymphoblastoid cell line
6
mucosa of rectum
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
osteoblast
6
pancreatic alpha cell
6
uterus
5
A673
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
Life stage
4
embryonic
Date released
3
September, 2022
1
February, 2021
1
March, 2020
1
May, 2021
Software used
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
annotation_type!
variant allelic effects
software_used.software.name!
macs
Showing 6 of 6 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP