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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
131
monocyte
88
heart
86
stomach
80
kidney
72
brain
68
lung
66
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
62
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
51
neural progenitor cell
49
CD8-positive, alpha-beta T cell
49
liver
48
thymus
45
right lung
43
hematopoietic multipotent progenitor cell
43
islet of Langerhans
41
B cell
41
K562
41
right kidney
39
renal cortex interstitium
39
renal pelvis
39
retina
36
left kidney
35
spinal cord
34
spleen
33
hepatocyte
32
CD4-positive, alpha-beta memory T cell
32
heart left ventricle
31
CD14-positive monocyte
30
adipose tissue
28
regulatory T cell
26
MCF-7
23
T-helper 1 cell
23
adipocyte
23
body of pancreas
23
endothelial cell
23
natural killer cell
23
sigmoid colon
23
tibial nerve
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
EndoC_BH1
22
epithelial cell of proximal tubule
22
foreskin keratinocyte
21
T-helper 17 cell
21
caudate nucleus
21
pancreatic ductal cell
20
breast cancer cell
20
glomerular endothelial cell
20
mononuclear cell
20
ovary
20
pancreas
20
pigmented layer of retina
20
psoas muscle
20
subcutaneous adipose tissue
19
foreskin fibroblast
19
macrophage
19
mesenchymal stem cell
18
HFFc6
18
coronary artery
18
embryonic stem cell
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
18
heart right ventricle
18
substantia nigra
18
thyroid gland
18
transverse colon
17
HepG2
17
T-helper 2 cell
17
muscle of trunk
17
omental fat pad
17
osteoblast
17
right atrium auricular region
17
testis
16
T cell
16
chorionic villus
16
fibroblast of lung
16
induced pluripotent stem cell
16
keratinocyte
16
layer of hippocampus
16
skeletal muscle tissue
16
tibial artery
16
upper lobe of left lung
15
GM12878
15
cardiac muscle cell
15
cerebellum
15
neutrophil
15
pancreatic beta cell
15
retinal pigment epithelial cell
15
skeletal muscle myoblast
14
H9
14
ascending aorta
14
endocrine pancreas
14
endothelial cell of hepatic sinusoid
14
frontal cortex
14
pancreatic alpha cell
14
prostate gland
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
fibroblast of cardiac tissue
13
mammary gland epithelial cell
13
neurosphere
13
putamen
13
temporal lobe
12
Ammon's horn
12
CD4-positive, alpha-beta T cell
12
fibroblast of dermis
12
lymphoblastoid cell line
12
mammary epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
pancreatic acinar cell
12
pancreatic delta cell
11
breast epithelium
11
epithelial cell of prostate
11
glomerular visceral epithelial cell
11
left renal cortex interstitium
10
22Rv1
10
Rhabdomyosarcoma
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
kidney tubule cell
10
left cardiac atrium
10
lymphocyte
10
neuronal stem cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal pelvis
10
smooth muscle cell
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
choroid plexus epithelial cell
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
left renal pelvis
9
liposarcoma
9
parathyroid adenoma
9
right renal cortex interstitium
9
skeletal muscle satellite cell
9
thoracic aorta
9
tongue
9
vagina
8
B-lymphoblastoid cell line
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
hepatic stellate cell
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BJ cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
mature neutrophil
7
right lobe of liver
7
skin fibroblast
7
stomach smooth muscle
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
annotation_type!
variant allelic effects
month_released!
November, 2021
Showing 1 of 1 results
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP