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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
6
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
in vitro differentiated cells
Biosample term
64
stomach
60
heart
50
muscle of arm
49
lung
47
brain
46
kidney
46
small intestine
45
adrenal gland
43
muscle of leg
42
large intestine
42
placenta
41
A549
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
34
right lung
33
thymus
31
right kidney
30
hematopoietic multipotent progenitor cell
30
renal cortex interstitium
30
renal pelvis
27
CD14-positive monocyte
27
left kidney
25
B cell
24
spinal cord
23
CD4-positive, alpha-beta memory T cell
23
spleen
22
liver
18
heart left ventricle
17
sigmoid colon
17
trophoblast cell
16
MCF-7
16
foreskin keratinocyte
15
CD8-positive, alpha-beta memory T cell
15
K562
14
adipose tissue
14
gastrocnemius medialis
14
ovary
14
thyroid gland
14
transverse colon
13
body of pancreas
13
mononuclear cell
13
muscle of trunk
13
psoas muscle
12
chorionic villus
12
pancreas
11
Peyer's patch
11
adipocyte
11
endocrine pancreas
11
endothelial cell of umbilical vein
11
foreskin fibroblast
11
natural killer cell
11
retina
11
testis
11
tibial nerve
11
upper lobe of left lung
10
CD8-positive, alpha-beta T cell
10
T-helper 1 cell
10
caudate nucleus
10
fibroblast of lung
10
heart right ventricle
10
neurosphere
10
pituitary stalk
10
regulatory T cell
9
H9
9
T cell
9
breast epithelium
9
cardiac muscle cell
9
esophagus squamous epithelium
9
layer of hippocampus
9
left renal cortex interstitium
9
left renal pelvis
9
neural progenitor cell
9
right renal pelvis
9
skeletal muscle myoblast
9
skeletal muscle tissue
8
CD4-positive, alpha-beta T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
dermis blood vessel endothelial cell
8
epithelial cell of prostate
8
esophagus muscularis mucosa
8
fibroblast of cardiac tissue
8
fibroblast of dermis
8
hepatocyte
8
lower leg skin
8
mesenchymal stem cell
8
omental fat pad
8
right renal cortex interstitium
7
SK-N-DZ
7
SK-N-SH
7
ascending aorta
7
bronchial epithelial cell
7
chorion membrane
7
coronary artery
7
eye
7
kidney tubule cell
7
mammary gland epithelial cell
7
osteoblast
7
parathyroid adenoma
7
prostate gland
7
right atrium auricular region
7
substantia nigra
7
temporal lobe
7
tibial artery
7
tongue
7
trophoblast
6
22Rv1
6
T-cell
6
WI38
6
angular gyrus
6
aorta
6
cerebellum
6
cingulate gyrus
6
colonic mucosa
6
dendritic cell
6
duodenal mucosa
6
endodermal cell
6
endometrium adenocarcinoma
6
esophagus
6
fibroblast of breast
6
foreskin melanocyte
6
frontal cortex
6
gastroesophageal sphincter
6
immortal human breast epithelial cell line cell
6
keratinocyte
6
limb
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
neutrophil
6
skin fibroblast
6
stomach smooth muscle
6
thoracic aorta
6
urinary bladder
6
vagina
5
Ammon's horn
5
GM12878
5
HAP-1
5
HEK293
5
HT-29
5
HepG2
5
IMR-90
5
LNCaP clone FGC
5
MM.1S
5
NAMALWA cell
5
OCI-LY7
5
PC-9
5
T47D
5
bipolar neuron
5
choroid plexus epithelial cell
5
globus pallidus
5
glomerular endothelial cell
5
glomerular visceral epithelial cell
5
mammary epithelial cell
5
mesendoderm
5
mesodermal cell
5
putamen
5
renal cortical epithelial cell
5
retinal pigment epithelial cell
5
subcutaneous abdominal adipose tissue
4
A172
4
A673
4
ACHN
4
Brodmann (1909) area 46
4
CD1c-positive myeloid dendritic cell
4
CMK
4
Caki2
4
Daoy
4
GM04503
4
GM04504
4
GM06990
4
GM10248
4
GM10266
4
GM12864
4
GM12865
4
GM23248
4
H1-hESC
4
H4
4
H7-hESC
4
HL-60
4
HUES6
4
KARPAS-422 cell
4
KBM-7
4
L1-S8
4
LHCN-M2
4
LNCAP
4
LoVo cell
4
M059J
4
MG63
4
PC-3
4
Panc1
4
RCC 7860
4
RPMI7951
4
RPMI8226
4
RWPE1
4
SJCRH30
4
SJSA1
Life stage
3
embryonic
Date released
2
September, 2022
1
February, 2021
1
June, 2020
1
May, 2021
Software used
2
r
1
abc
1
encode-ccres
1
macs
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
annotation_type!
variant allelic effects
organ_slims!
uterus
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP