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Citing CMDGA
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Annotation type
1355
target gene predictions
944
chromatin state
857
accessible chromatin
834
candidate regulatory elements
506
gene expression
167
differential activity
167
eQTL
138
variant allelic effects
137
histone modifications
99
binding sites
74
Fine-mapped variants
13
caQTL
5
hQTL
5
sQTL
variant to gene
3
meQTL
3
pQTL
2
other
Annotation Category
1
Genetic variant effects
1
Others
Annotation type Category
1
ChIP-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
1
primary cell
Biosample term
1
naive thymus-derived CD4-positive, alpha-beta T cell
Life stage
1
adult
Date released
1
May, 2021
1
November, 2019
Software used
1
limix
1
macs
Lab
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
2
AMP
RFA
2
AMP
annotation_type!
variant to gene
month_released!
February, 2021
Showing 2 of 2 results
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Download
FileSet
DSR801ZQH
released
Annotation file set
: histone quantitative trait loci (hQTL) from H3K27ac ChIP-seq of BLUEPRINT epigenome project of human immune cell types (naive CD4+ T cells) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR942GKV
released
Annotation file set
: Annotation for gene TSS
Lab:
Kyle Gaulton, UCSD
Project:
AMP