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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
4
target gene predictions
3
candidate regulatory elements
3
chromatin state
2
histone modifications
1
binding sites
0
Fine-mapped variants
Annotation Category
4
cis-regulatory elements
Annotation type Category
2
DNase-seq
2
snATAC-seq
Available data
4
bed bed3+
2
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
2
cell line
2
primary cell
Biosample term
23
retina
20
pigmented layer of retina
18
monocyte
16
endothelial cell
16
fibroblast
13
excitatory neuron
13
macrophage
10
kidney
10
neural progenitor cell
10
pericyte cell
9
islet of Langerhans
9
retinal pigment epithelial cell
9
smooth muscle cell
8
B cell
8
EndoC_BH1
8
astrocyte
8
hepatocyte
8
pancreatic beta cell
8
pancreatic ductal cell
7
T cell
7
pancreatic acinar cell
7
pancreatic alpha cell
6
SGBS preadipocytes
6
adipocyte
6
coronary artery
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
glutamatergic neuron
6
right atrium auricular region
6
tibial artery
6
tibial nerve
5
Ammon's horn
5
CD8-positive, alpha-beta T cell
5
caudate nucleus
5
chondrocyte
5
erythroblast
5
frontal cortex
5
heart
5
inhibitory neuron
5
omental fat pad
5
osteoblast
5
pancreas
5
pancreatic delta cell
5
putamen
5
regulatory T cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
5
subcutaneous adipose tissue
4
ascending aorta
4
cerebellum
4
fibroblast of cardiac tissue
4
liver
4
memory B cell
4
natural killer cell
4
pancreatic stellate cell
4
type II pneumocyte
3
cardiac fibroblast
3
C1 segment of cervical spinal cord
3
T-helper 1 cell
3
amygdala
3
anterior cingulate cortex
3
body of pancreas
3
cerebellum (Hemisphere)
3
colon epithelial cell
3
cortical cell of adrenal gland
3
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
3
endothelial cell of lymphatic vessel
3
enterocyte
3
gabaergic neuron
3
gastrocnemius medialis(Muscle - Skeletal)
3
glomerular visceral epithelial cell
3
heart left ventricle
3
hepatic stellate cell
3
hypothalamus
3
left ventricle myocardium
3
mesenchymal stem cell
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
nucleus accumbens
3
right lobe of liver
3
skin fibroblast
3
stomach
3
substantia nigra
3
type I muscle cell
3
type I pneumocyte
type II muscle cell
2
CD4-positive helper T cell
2
HepG2
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
acute myeloid leukemia cell
2
adipose tissue
2
adipose-derived stem cell
2
aortic endothelial cell
2
basal cell
2
blood vessel smooth muscle cell
2
bone marrow cell
2
brain
2
brain pericyte
2
capillary endothelial cell
2
cardiac muscle cell
2
central memory CD8-positive, alpha-beta T cell
2
choroid plexus epithelial cell
2
ciliated cell
2
club cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
endothelial cell of umbilical vein
2
enteric neuron
2
enteric smooth muscle cell
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
gamma-delta T cell
2
glial cell
2
globus pallidus
2
glomerular endothelial cell
2
keratinocyte
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
mature natural killer cell
2
medulla oblongata
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesothelial cell
2
midbrain
2
muscle of leg
2
naive regulatory T cell
2
neuron
2
occipital lobe
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
pancreatic polypeptide-secreting cell
2
plasma cell
2
plasmacytoid dendritic cell
2
pons
2
renal cortical epithelial cell
2
renal pelvis
2
schwann cell
2
skeletal muscle myoblast
2
smooth muscle cell of the esophagus
2
spinal cord
2
spleen
2
superior temporal gyrus
1
hindlimb muscle
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12878
1
GM13976
1
GM13977
1
GM18507
1
GM19240
1
GM20000
1
GM23248
Organ
4
connective tissue
4
heart
Date released
2
June, 2020
2
November, 2021
Software used
4
macs
Lab
2
AMP-T2D consortium
2
Bing Ren, UCSD
Project
2
AMP
2
ENCODE
RFA
2
AMP
2
ENCODE3
biosample_term_name!
type II muscle cell
Showing 4 of 4 results
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Download
FileSet
DSR482QLY
released
Annotation file set
: Accessible chromatin annotation of Fetal Cardiac Fibroblast from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR362JWP
released
Annotation file set
: Accessible chromatin annotation of Cardiac Fibroblasts from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR025CSW
released
Annotation file set
: Accessible chromatin annotation for Cardiovascular HCF from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR426JNG
released
Annotation file set
: Accessible chromatin annotation for Cardiovascular HCFaa from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP