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Schema
Citing CMDGA
Clear Filters
Annotation type
17
candidate regulatory elements
10
target gene predictions
7
chromatin state
4
accessible chromatin
3
eQTL
2
gene expression
2
variant allelic effects
0
binding sites
Annotation Category
4
cis-regulatory elements
Annotation type Category
2
DNase-seq
2
snATAC-seq
Available data
4
bed bed3+
2
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
2
primary cell
2
tissue
Biosample term
2
smooth muscle cell of the esophagus
1
esophagus muscularis mucosa
1
esophagus squamous epithelium
Organ
255
epithelium
119
connective tissue
70
pancreas
65
eye
58
bodily fluid
58
brain
57
blood
57
kidney
57
vasculature
42
blood vessel
37
liver
34
musculature of body
31
heart
31
skin of body
27
intestine
25
embryo
24
lung
23
bone element
22
limb
20
lymph node
19
mammary gland
17
artery
16
large intestine
13
prostate gland
12
extraembryonic component
10
penis
9
adipose tissue
8
gonad
8
skeleton
8
stomach
7
adrenal gland
7
placenta
7
uterus
6
lymphatic vessel
5
bronchus
5
testis
5
vein
4
bone marrow
4
esophagus
4
spinal cord
4
ureter
3
nerve
3
small intestine
3
spleen
3
thymus
3
trachea
2
lymphoid tissue
2
ovary
2
thyroid gland
1
breast
1
mouth
1
nose
1
tongue
1
urinary bladder
Date released
2
June, 2020
2
November, 2021
Software used
4
macs
Lab
2
AMP-T2D consortium
2
Bing Ren, UCSD
Project
2
AMP
2
ENCODE
RFA
2
AMP
2
ENCODE3
Showing 4 of 4 results
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Download
FileSet
DSR279PTE
released
Annotation file set
: Accessible chromatin annotation of Smooth Muscle (Esophageal Muscularis) 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR530GKX
released
Annotation file set
: Accessible chromatin annotation of Smooth Muscle (Esophageal Muscularis) 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR827TCY
released
Annotation file set
: Accessible chromatin annotation for Digestive tract Esophagus squamous epithelium from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR789NPM
released
Annotation file set
: Accessible chromatin annotation for Digestive tract Esophagus muscularis mucosa from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP