Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
candidate regulatory elements
2
accessible chromatin
2
target gene predictions
0
variant allelic effects
Annotation Category
2
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
DNase-seq
Available data
2
bed bed3+
2
bigWig
File set status
2
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
24
retina
22
fibroblast
20
pigmented layer of retina
18
endothelial cell
18
monocyte
16
macrophage
13
excitatory neuron
11
kidney
11
smooth muscle cell
10
hepatocyte
10
neural progenitor cell
10
pericyte cell
9
EndoC_BH1
9
T cell
9
pancreatic beta cell
9
retinal pigment epithelial cell
8
B cell
8
astrocyte
8
islet of Langerhans
8
pancreatic alpha cell
8
pancreatic ductal cell
7
adipocyte
7
heart
7
pancreatic acinar cell
7
skeletal muscle fiber
6
SGBS preadipocytes
6
endothelial cell of hepatic sinusoid
6
enterocyte
6
glutamatergic neuron
6
pancreas
6
pancreatic delta cell
5
cardiac fibroblast
5
CD8-positive, alpha-beta T cell
5
chondrocyte
5
coronary artery
5
embryonic stem cell
5
erythroblast
5
heart left ventricle
5
inhibitory neuron
5
osteoblast
5
regulatory T cell
5
right atrium auricular region
5
skeletal muscle satellite cell
5
tibial artery
5
tibial nerve
5
type II pneumocyte
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
basal cell
4
cardiac muscle cell
4
cortical cell of adrenal gland
4
fibroblast of cardiac tissue
4
glomerular visceral epithelial cell
4
liver
4
memory B cell
4
myofibroblast cell
4
natural killer cell
4
pancreatic stellate cell
3
Schwann cell
3
T-helper 1 cell
3
adipose tissue
3
brain
3
brain pericyte
3
choroid plexus epithelial cell
3
colon epithelial cell
3
endothelial cell of lymphatic vessel
3
frontal cortex
3
gabaergic neuron
3
goblet cell
3
hepatic stellate cell
3
keratinocyte
3
mammary gland epithelial cell
3
mesenchymal stem cell
3
mesothelial cell
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
occipital lobe
3
pancreatic polypeptide-secreting cell
3
renal cortical epithelial cell
3
renal pelvis
3
skin fibroblast
3
stomach
3
subcutaneous adipose tissue
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
hindlimb muscle
2
muscle of leg
2
Ammon's horn
2
CD4-positive helper T cell
2
HepG2
2
MIN6
2
Muller cell
2
Rh-4 cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
acute myeloid leukemia cell
2
aortic endothelial cell
2
ascending aorta
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
blood vessel smooth muscle cell
2
bone marrow cell
2
capillary endothelial cell
2
caudate nucleus
2
central memory CD8-positive, alpha-beta T cell
2
ciliated cell
2
club cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
endothelial cell of umbilical vein
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
epithelial cell of proximal tubule
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
gamma-delta T cell
2
glial cell
2
globus pallidus
2
glomerular endothelial cell
2
heart right ventricle
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
left cardiac atrium
2
left renal pelvis
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mast cell
2
mature natural killer cell
2
medulla oblongata
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
midbrain
2
muscle of arm
2
muscle of leg
2
naive regulatory T cell
2
naive t cell
2
neuron
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
omental fat pad
2
parietal cell
2
peptic cell
2
plasma cell
2
plasmacytoid dendritic cell
2
pons
2
putamen
2
renal cortex interstitium
2
right renal pelvis
2
schwann cell
2
skeletal muscle cell
2
skeletal muscle myoblast
2
smooth muscle cell of the brain vasculature
2
smooth muscle cell of the esophagus
2
spinal cord
2
spleen
2
superior temporal gyrus
2
thoracic aorta
2
thyroid follicular cell
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
Adipose SGBS cell line (adipocyte)
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
Organ
2
adipose tissue
2
connective tissue
Life stage
2
adult
Date released
1
January, 2020
1
September, 2018
Software used
2
macs
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
Showing 2 of 2 results
table-tab-icon
matrix-icon
Download
FileSet
DSR809PGU
released
Annotation file set
: Accessible chromatin annotation of adipose omental fat pad from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR419KCH
released
Annotation file set
: ATAC-seq sites in omental fat pad for 1 sample from ENCODE
Lab:
AMP-T2D consortium
Project:
AMP