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Schema
Citing CMDGA
Clear Filters
Annotation type
609
gene expression
162
differential activity
108
eQTL
16
variant allelic effects
7
caQTL
4
accessible chromatin
2
Fine-mapped variants
2
sQTL
2
variant to gene
1
binding sites
1
histone modifications
1
other
1
representative DNase hypersensitivity sites
Annotation Category
5
cis-regulatory elements
Annotation type Category
3
ATAC-seq
1
ChIP-seq
1
DNase-seq
File set status
5
released
Genome assembly (visualization)
hg19
475
GRCh38
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
primary cell
Biosample term
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
glomerular endothelial cell
1
neural progenitor cell
1
neuron cell of Hypothalamus (neuron)
Organ
1
epithelium
1
kidney
Date released
February, 2024
3
November, 2022
1
August, 2021
1
June, 2020
Software used
5
macs
Lab
3
Struan F.A. Grant, CHOP
2
AMP-T2D consortium
Project
5
AMP
RFA
3
AMP2
2
AMP
assembly!
hg19
month_released!
February, 2024
Showing 5 of 5 results
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FileSet
DSR593BUS
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Hypothalamic Neuron).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR817DDX
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Hypothalamic Progenitor).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR455VRI
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Embryonic Stem Cell).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR680UFD
released
Annotation file set
: Histone modifications annotation of H3K27me3 ChIPseq of neural progenitor cells differentiated into neural lineage until appropriate time points (6 hours).
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR885BSZ
released
Annotation file set
: Accessible chromatin annotation for Kidney HRGEC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP