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Citing CMDGA
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Annotation type
58
target gene predictions
9
candidate regulatory elements
4
binding sites
4
chromatin state
3
accessible chromatin
2
gene expression
2
histone modifications
1
eQTL
Annotation Category
3
cis-regulatory elements
2
Gene expression levels
Annotation type Category
2
DNase-seq
2
RNA-seq
1
snATAC-seq
Available data
3
bed bed3+
2
tsv
1
bigWig
File set status
5
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
3
tissue
2
primary cell
Biosample term
2
uterus
1
Ishikawa
1
cervix - ectocervix
1
uterine smooth muscle cell
Organ
463
epithelium
252
kidney
137
connective tissue
113
pancreas
72
vasculature
61
brain
60
eye
51
blood vessel
48
liver
47
heart
38
musculature of body
25
limb
24
intestine
22
embryo
20
adipose tissue
19
artery
19
bone element
16
lung
15
skin of body
13
blood
13
bodily fluid
12
large intestine
10
stomach
9
extraembryonic component
8
adrenal gland
8
lymph node
8
skeleton
7
gonad
7
lymphatic vessel
7
mammary gland
6
esophagus
6
prostate gland
5
nerve
5
uterus
4
placenta
4
ureter
3
bronchus
3
lymphoid tissue
3
ovary
3
penis
3
small intestine
3
spinal cord
3
spleen
3
testis
3
thyroid gland
3
vein
2
bone marrow
2
breast
2
mouth
2
thymus
2
tongue
2
urinary bladder
1
nose
1
pericardium
1
pituitary gland
1
trachea
1
vagina
Life stage
2
adult
Date released
2
June, 2020
2
March, 2024
1
November, 2021
Software used
3
macs
2
r
Lab
4
AMP-T2D consortium
1
Bing Ren, UCSD
Project
4
AMP
1
ENCODE
RFA
4
AMP
1
ENCODE3
biosample_term_name!
mesothelial cell
Showing 5 of 5 results
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Download
FileSet
DSR606YST
released
Annotation file set
: Gene expression summary from GTEx V8 - Gene TPMs for Uterus.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR206PQX
released
Annotation file set
: Gene expression summary from GTEx V8 - Gene TPMs for Cervix - Ectocervix.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR680BYM
released
Annotation file set
: Accessible chromatin annotation of Smooth Muscle (Uterine) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR373YCF
released
Annotation file set
: Accessible chromatin annotation for Uterus Uterus from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR250RSS
released
Annotation file set
: Accessible chromatin annotation for Uterus Ishikawa from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP