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Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
3
accessible chromatin
3
target gene predictions
2
binding sites
2
chromatin state
1
histone modifications
1
variant allelic effects
Annotation Category
5
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
snATAC-seq
1
DNase-seq
Available data
3
bed bed3+
2
bed bed9
2
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
3
bronchial epithelial cell
2
club cell
Organ
265
epithelium
136
connective tissue
127
kidney
114
brain
86
lung
84
musculature of body
82
pancreas
80
intestine
77
heart
69
vasculature
68
eye
54
blood vessel
53
limb
48
skin of body
46
large intestine
42
extraembryonic component
41
liver
40
embryo
39
bodily fluid
37
blood
32
stomach
30
bone element
23
small intestine
22
mammary gland
21
adrenal gland
20
placenta
19
artery
18
prostate gland
17
adipose tissue
17
ureter
16
lymph node
13
gonad
13
penis
13
thymus
11
esophagus
11
skeleton
10
spinal cord
8
spleen
7
lymphoid tissue
7
nerve
7
uterus
7
vein
6
lymphatic vessel
6
ovary
6
testis
6
thyroid gland
5
bronchus
5
mouth
4
bone marrow
3
breast
3
tongue
3
urinary bladder
2
nose
2
vagina
1
trachea
Life stage
2
unknown
Date released
2
September, 2022
1
April, 2020
1
June, 2020
1
November, 2021
Software used
2
chromhmm
2
macs
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
1
Xin Sun, UCSD
Project
3
AMP
1
ENCODE
1
LungMap
RFA
3
AMP
1
ENCODE3
1
LungMap2
biosample_term_name!
muscle of leg
Showing 5 of 5 results
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Download
FileSet
DSR702JKN
released
Annotation file set
: Chromatin states for BSS00153 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR524OJC
released
Annotation file set
: Chromatin states for BSS00150 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR848VTY
released
Annotation file set
: ATAC-seq peaks in club cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR678WWH
released
Annotation file set
: Accessible chromatin annotation of Club Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR613FQC
released
Annotation file set
: Accessible chromatin annotation for Lung Bronchial epithelial cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP