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Schema
Citing CMDGA
Clear Filters
Annotation type
17
candidate regulatory elements
8
target gene predictions
7
chromatin state
4
accessible chromatin
3
eQTL
2
gene expression
2
variant allelic effects
Annotation Category
4
cis-regulatory elements
Annotation type Category
2
DNase-seq
2
snATAC-seq
Available data
4
bed bed3+
2
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
2
primary cell
2
tissue
Biosample term
2
smooth muscle cell of the esophagus
1
esophagus muscularis mucosa
1
esophagus squamous epithelium
Organ
154
epithelium
71
connective tissue
46
pancreas
41
brain
35
kidney
25
musculature of body
25
vasculature
21
intestine
20
heart
15
blood vessel
15
lung
13
skin of body
12
blood
12
bodily fluid
12
embryo
12
eye
11
limb
11
liver
10
large intestine
9
extraembryonic component
8
bone element
8
lymph node
8
stomach
7
adrenal gland
7
mammary gland
5
artery
5
gonad
5
prostate gland
4
esophagus
4
lymphatic vessel
4
placenta
4
ureter
3
bronchus
3
penis
3
small intestine
3
uterus
2
adipose tissue
2
bone marrow
2
lymphoid tissue
2
nerve
2
ovary
2
spinal cord
2
testis
2
thymus
2
thyroid gland
2
vein
1
breast
1
mouth
1
nose
1
skeleton
1
spleen
1
tongue
1
trachea
1
urinary bladder
Date released
2
June, 2020
2
November, 2021
Software used
4
macs
Lab
2
AMP-T2D consortium
2
Bing Ren, UCSD
Project
2
AMP
2
ENCODE
RFA
2
AMP
2
ENCODE3
biosample_term_name!
muscle of leg
annotation_type_category!
ATAC-seq
Showing 4 of 4 results
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Download
FileSet
DSR279PTE
released
Annotation file set
: Accessible chromatin annotation of Smooth Muscle (Esophageal Muscularis) 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR530GKX
released
Annotation file set
: Accessible chromatin annotation of Smooth Muscle (Esophageal Muscularis) 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR827TCY
released
Annotation file set
: Accessible chromatin annotation for Digestive tract Esophagus squamous epithelium from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR789NPM
released
Annotation file set
: Accessible chromatin annotation for Digestive tract Esophagus muscularis mucosa from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP