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Schema
Citing CMDGA
Clear Filters
Annotation type
19
candidate regulatory elements
13
eQTL
13
target gene predictions
12
gene expression
10
chromatin state
6
Fine-mapped variants
4
accessible chromatin
3
variant allelic effects
2
binding sites
2
differential activity
1
histone modifications
Annotation Category
4
cis-regulatory elements
Annotation type Category
3
ATAC-seq
1
DNase-seq
Available data
4
bed bed3+
2
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
3
tissue
1
cell line
Biosample term
1
adipose tissue
1
adipose-derived mesenchymal stem cell
1
omental fat pad
1
subcutaneous adipose tissue
Organ
200
epithelium
79
connective tissue
63
pancreas
57
eye
36
kidney
vasculature
24
brain
22
liver
22
musculature of body
21
blood vessel
21
intestine
17
heart
15
bone element
15
lung
14
limb
13
skin of body
12
blood
12
bodily fluid
12
embryo
10
large intestine
9
artery
9
extraembryonic component
8
lymph node
8
skeleton
8
stomach
7
adrenal gland
7
mammary gland
5
gonad
5
prostate gland
4
adipose tissue
4
esophagus
4
lymphatic vessel
4
placenta
3
bronchus
3
penis
3
small intestine
3
uterus
2
bone marrow
2
lymphoid tissue
2
nerve
2
ovary
2
spinal cord
2
spleen
2
testis
2
thymus
2
thyroid gland
2
vein
1
breast
1
mouth
1
nose
1
tongue
1
trachea
1
ureter
1
urinary bladder
Life stage
2
adult
Date released
January, 2020
2
September, 2018
1
June, 2020
1
November, 2022
Software used
4
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
organ_slims!
vasculature
month_released!
January, 2020
Showing 4 of 4 results
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Download
FileSet
DSR315TSA
released
Annotation file set
: Accessible chromatin of subcutaneous adipose tissue of 11 out of 17 individuals to generate chromatin accessibility profiles
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR817QSX
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipose-Derived Mesenchymal Stem Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR978YHK
released
Annotation file set
: ATAC-seq sites in subcutaneous adipose tissue for 1 sample from ENCODE
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR419KCH
released
Annotation file set
: ATAC-seq sites in omental fat pad for 1 sample from ENCODE
Lab:
AMP-T2D consortium
Project:
AMP