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Citing CMDGA
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Annotation type
44
chromatin state
34
target gene predictions
33
candidate regulatory elements
3
accessible chromatin
1
gene expression
Annotation Category
3
cis-regulatory elements
1
Gene expression levels
Annotation type Category
2
DNase-seq
1
ATAC-seq
1
RNA-seq
Available data
3
bed bed3+
3
bigWig
File set status
4
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
4
Homo sapiens
Biosample type
2
primary cell
1
cell line
1
tissue
Biosample term
1
cardiac atrium fibroblast
1
glomerular visceral epithelial cell
1
heart
1
pancreatic ductal cell
Organ
2
epithelium
2
heart
1
connective tissue
1
kidney
1
pancreas
Life stage
571
adult
57
fetal
57
unknown
26
embryonic
4
child
2
newborn
Date released
2
January, 2020
1
February, 2020
1
October, 2019
Software used
3
macs
1
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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FileSet
DSR407RPR
released
Annotation file set
: Gene expression levels of Heart cardiac atrium fibroblast from RNA-seq (ENCODE) child
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR855KHX
released
Annotation file set
: Accessible chromatin annotation of kidney podocytes (glomerular visceral epithelial cell) from GSE115961 DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR270JSX
released
Annotation file set
: Accessible chromatin annotation of heart child from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR920WKD
released
Annotation file set
: Pancreatic ductal cell accessible chromatin annotation of overlapping ATAC-seq sites from 3 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP