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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
histone modifications
3
binding sites
3
target gene predictions
2
accessible chromatin
2
candidate regulatory elements
2
chromatin state
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
6
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
7
hg19
1
GRCh38
1
hg18
Organism
8
Homo sapiens
Biosample type
8
cell line
Biosample term
59
HeLa-S3
43
H1-hESC
42
heart
40
stomach
39
A549
35
brain
33
lung
32
K562
32
muscle of arm
32
small intestine
31
adrenal gland
31
kidney
30
placenta
29
muscle of leg
27
common myeloid progenitor, CD34-positive
27
large intestine
26
left lung
26
muscle of back
26
thymus
23
CD14-positive monocyte
22
right lung
21
hematopoietic multipotent progenitor cell
20
liver
20
right kidney
19
HFFc6
18
B cell
18
CD4-positive, alpha-beta memory T cell
18
left kidney
18
renal cortex interstitium
18
renal pelvis
16
spinal cord
15
adipose tissue
15
heart left ventricle
14
CD8-positive, alpha-beta memory T cell
14
MCF-7
13
adipocyte
13
spleen
12
GM12878
12
keratinocyte
12
mononuclear cell
12
neural progenitor cell
12
trophoblast cell
11
endothelial cell of umbilical vein
11
sigmoid colon
10
fibroblast of lung
10
heart right ventricle
10
psoas muscle
9
H9
9
body of pancreas
9
breast cancer cell
9
embryonic stem cell
9
endothelial cell
9
foreskin fibroblast
9
foreskin keratinocyte
9
gastrocnemius medialis
9
mammary gland epithelial cell
9
pancreas
9
thyroid gland
8
HepG2
8
T cell
8
aorta
8
chorionic villus
8
endocrine pancreas
8
fibroblast of cardiac tissue
8
fibroblast of dermis
8
muscle of trunk
8
ovary
8
pericyte cell
8
pituitary stalk
7
caudate nucleus
7
fibroblast cell line
7
hepatocyte
7
left cardiac atrium
7
lymphocyte
7
natural killer cell
7
regulatory T cell
7
testis
6
CD4-positive, alpha-beta T cell
6
CD8-positive, alpha-beta T cell
6
Peyer's patch
6
SK-N-SH
6
T-helper 1 cell
6
T-helper 17 cell
6
T-helper 2 cell
6
angular gyrus
6
bronchial epithelial cell
6
cardiac muscle cell
6
chorion membrane
6
coronary artery
6
dendritic cell
6
endometrium adenocarcinoma
6
endothelial cell of hepatic sinusoid
6
epithelial cell of prostate
6
erythroblast
6
fibroblast
6
layer of hippocampus
6
mesenchymal stem cell
6
retina
6
skeletal muscle myoblast
6
skeletal muscle tissue
6
tibial nerve
6
transverse colon
5
22Rv1
5
CD14-positive, CD16-negative classical monocyte
5
GM19238
5
GM19239
5
GM19240
5
HUES8
5
IMR-90
5
KARPAS-422 cell
5
NAMALWA cell
5
alternatively activated macrophage
5
ascending aorta
5
astrocyte
5
breast epithelium
5
cingulate gyrus
5
colon epithelial cell
5
colonic mucosa
5
dermis lymphatic vessel endothelial cell
5
duodenal mucosa
5
endodermal cell
5
esophagus
5
immortal human breast epithelial cell line cell
5
islet of Langerhans
5
mammary epithelial cell
5
mature neutrophil
5
melanoma
5
mesendoderm
5
naive T cell
5
osteoblast
5
smooth muscle cell
5
trophoblast
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
BE(2)-C
4
BJ cell
4
Brodmann (1909) area 46
4
Caco-2 cell
4
CyT49
4
GM06990
4
GM08714
4
GM12864
4
GM12865
4
GM12875
4
GM12891
4
GM12892
4
HAP-1
4
HCT116
4
HEK293
4
HL-60
4
HT-29
4
Jurkat
4
LNCaP clone FGC
4
LoVo cell
4
MM.1S
4
NT2-D1 cell
4
OCI-LY7
4
PC-9
4
SK-N-DZ
4
SK-N-MC
4
T47D
4
WERI-Rb-1
4
cerebellum
4
choroid plexus epithelial cell
4
dermis blood vessel endothelial cell
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
eye
4
fibroblast of breast
4
fibroblast of mammary gland
4
fibroblast of pulmonary artery
4
fibroblast of villous mesenchyme
4
frontal cortex
4
glioblastoma multiforme cancer stem cell
4
iPSC derived cell line
4
kidney tubule cell
4
left renal cortex interstitium
4
left renal pelvis
4
limb
4
luminal epithelial cell of mammary gland
4
monocyte
4
neutrophil
4
prostate cancer cell line
4
prostate gland
4
skeletal muscle satellite cell
4
skin fibroblast
4
temporal lobe
4
thoracic aorta
4
upper lobe of left lung
3
A673
3
Ammon's horn
3
BJAB cell
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Daoy
3
GM10248
3
GM10266
Disease term
2
hepatocellular carcinoma
Organ
8
liver
Life stage
2
child
Date released
2
September, 2022
1
August, 2017
1
August, 2021
1
February, 2021
1
March, 2020
1
May, 2021
1
October, 2022
Software used
3
chromhmm
1
abc
1
chicago
1
cisgenome
1
e-range
1
macs
1
r
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
8
AMP
RFA
8
AMP
Showing 8 of 8 results
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Download
FileSet
DSR637TIL
released
Annotation file set
: Binding sites annotation for HepG2 (HepG2) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR306YJJ
released
Annotation file set
: Target gene predictions for BSS00558 HepG2 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR533TVB
released
Annotation file set
: Chromatin states for BSS00558 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR366OIY
released
Annotation file set
: Binding sites of ChREBP, TF for liver lipogenesis, in HepG2 cells(PMID:21811631)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR877STJ
released
Annotation file set
: Binding sites annotation for Liver Hep_G2 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR651DDS
released
Annotation file set
: enhancer-gene predicton of HepG2-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR499URQ
released
Annotation file set
: A target gene prediction annotation in HepG2 of DSR452PKJ pCHi-C E-MTAB-7144
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR035696
released
Annotation file set
: ChromHMM 13-state model for Hepatocellular Carcinoma Cell Line
Lab:
Stephen Parker, UMich
Project:
AMP