Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
13
eQTL
11
gene expression
7
accessible chromatin
3
chromatin state
2
Fine-mapped variants
2
binding sites
2
sQTL
2
variant to gene
1
histone modifications
1
target gene predictions
1
variant allelic effects
Annotation Category
5
cis-regulatory elements
Annotation type Category
5
ChIP-seq
Available data
5
bed bed3+
1
bigBed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
22
heart
20
A549
19
brain
19
stomach
17
kidney
16
lung
16
muscle of arm
15
muscle of leg
15
placenta
15
small intestine
14
adrenal gland
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
12
thymus
11
hematopoietic multipotent progenitor cell
11
right lung
10
liver
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
K562
9
breast cancer cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
9
spinal cord
8
B cell
8
MCF-7
8
embryonic stem cell
8
heart left ventricle
8
mature neutrophil
8
neural progenitor cell
7
CD8-positive, alpha-beta memory T cell
7
adipocyte
7
adipose tissue
7
endothelial cell of umbilical vein
7
keratinocyte
7
melanoma
7
mononuclear cell
7
spleen
6
endothelial cell of hepatic sinusoid
6
fibroblast cell line
6
fibroblast of lung
6
foreskin fibroblast
6
left cardiac atrium
5
CD14-positive, CD16-negative classical monocyte
5
HepG2
5
foreskin keratinocyte
5
heart right ventricle
5
islet of Langerhans
5
layer of hippocampus
5
mammary epithelial cell
5
mammary gland epithelial cell
5
prostate cancer cell line
5
sigmoid colon
5
skeletal muscle myoblast
5
temporal lobe
5
trophoblast cell
4
CD14-positive monocyte
4
GM12878
4
H1-hESC
4
HeLa-S3
4
T cell
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
body of pancreas
4
bronchial epithelial cell
4
cardiac muscle cell
4
caudate nucleus
4
chorionic villus
4
endocrine pancreas
4
erythroblast
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
gastrocnemius medialis
4
glioblastoma multiforme cancer stem cell
4
mesenchymal stem cell
4
muscle of trunk
4
neuroblastoma cell
4
osteoblast
4
ovary
4
pancreas
4
prostate gland
4
psoas muscle
4
regulatory T cell
4
retina
4
testis
4
thyroid gland
4
tibial nerve
4
transverse colon
4
upper lobe of left lung
3
22Rv1
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
CD4-positive, alpha-beta T cell
3
Caco-2 cell
3
GM06990
3
GM08714
3
GM12864
3
GM12865
3
GM12875
3
GM12891
3
GM12892
3
GM19238
3
GM19239
3
GM19240
3
HEK293
3
HL-60
3
IMR-90
3
KARPAS-422 cell
3
NAMALWA cell
3
NT2-D1 cell
3
Peyer's patch
3
SK-N-MC
3
SK-N-SH
3
T-cell acute lymphoblastic leukemia
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
Tumor-derived cell line
3
WERI-Rb-1
3
acute myeloid leukemia
3
ascending aorta
3
chorion membrane
3
choroid plexus epithelial cell
3
cingulate gyrus
3
colonic mucosa
3
coronary artery
3
dermal fibroblast
3
dermis lymphatic vessel endothelial cell
3
diffuse intrinsic pontine glioma
3
duodenal mucosa
3
endodermal cell
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
hepatocyte
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
liposarcoma
3
mucosa of rectum
3
naive T cell
3
natural killer cell
3
neuronal stem cell
3
neurosphere
3
retinal pigment epithelial cell
3
right cardiac atrium
3
skeletal muscle tissue
3
skin fibroblast
3
stomach smooth muscle
3
substantia nigra
3
synovial sarcoma cell
3
thoracic aorta
3
tibial artery
3
triple-negative breast cancer
3
trophoblast
2
BL-2 cell
2
Brodmann (1909) area 46
2
Burkitt's lymphoma
2
CD1c-positive myeloid dendritic cell
2
CMK
2
COLO-320 cell
2
DND-41 cell
2
Daoy
2
ECC-1
2
ESC derived cell line
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
GM10248
2
GM10266
2
GM10847
2
GM12801
2
GM12872
2
GM12873
2
GM12874
2
GM15510
2
GM18505
2
GM18526
2
GM18951
2
GM19099
2
GM19193
2
GM23248
2
HAC cell
2
HAP-1
2
HBMEC cell
2
HCT-116 cell
2
HEK293-T-REx cell
2
HK-2 cell
2
HS-SY-2 cell
2
HT-29
2
HUES6
Organ
5
pancreas
Date released
2
August, 2017
1
April, 2019
1
February, 2021
1
March, 2020
Software used
3
chromhmm
1
macs
1
spp
Lab
2
AMP-T2D consortium
2
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR081BPN
released
Annotation file set
: Binding sites annotation for Pancreas Pancreatic_islets from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR883333
released
Annotation file set
: Islet TF binding sites (PDX, MAFB, NKX2.2, NKX6.1, FOXA2)
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
TSTSR037617
released
Annotation file set
: Chromatin States from Gaulton lab at UCSD for islet
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
TSTSR679993
released
Annotation file set
: ChromHMM 13-state model for Islets
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR043890
released
Annotation file set
: ChromHMM 18-state model for Islets
Lab:
AMP-T2D consortium
Project:
AMP