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Citing CMDGA
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Annotation type
671
gene expression
167
differential activity
108
eQTL
16
variant allelic effects
8
accessible chromatin
7
caQTL
2
Fine-mapped variants
2
sQTL
2
variant to gene
1
binding sites
1
histone modifications
1
other
1
representative DNase hypersensitivity sites
Annotation Category
2
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
2
RNA-seq
1
ChIP-seq
Available data
1
bed bed3+
File set status
3
released
Genome assembly (visualization)
hg19
6
GRCh38
1
hg18
Organism
3
Homo sapiens
Biosample type
1
cell line
1
primary cell
1
tissue
Biosample term
1
HepG2
1
islet of Langerhans
1
monocyte
Organ
1
liver
1
pancreas
Life stage
1
adult
Date released
1
August, 2021
1
March, 2023
1
May, 2021
Software used
1
cisgenome
1
e-range
1
limix
1
qTLtools
1
sqtlseeker
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
breast cancer cell
assembly!
hg19
Showing 3 of 3 results
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Download
FileSet
DSR615JGJ
released
Annotation file set
: Lead variant-to-phenotype associations identified using permutations. Contains data for all phenotypes (eGene/Junction) with an sQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR366OIY
released
Annotation file set
: Binding sites of ChREBP, TF for liver lipogenesis, in HepG2 cells(PMID:21811631)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337BHM
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP