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Schema
Citing CMDGA
Clear Filters
Annotation type
6
candidate regulatory elements
5
chromatin state
4
target gene predictions
3
binding sites
2
accessible chromatin
1
gene expression
1
histone modifications
1
variant allelic effects
0
caQTL
0
variant to gene
Annotation Category
5
cis-regulatory elements
Annotation type Category
5
ChIP-seq
Available data
4
bed bed9
2
bigBed bed9
1
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
4
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
5
endothelial cell of umbilical vein
Organ
77
kidney
76
musculature of body
72
brain
71
lung
59
intestine
55
epithelium
53
heart
50
connective tissue
50
limb
36
large intestine
36
vasculature
35
skin of body
33
extraembryonic component
31
blood vessel
28
embryo
27
bodily fluid
25
blood
24
stomach
20
small intestine
19
pancreas
18
liver
16
placenta
15
bone element
15
mammary gland
14
adrenal gland
13
prostate gland
13
ureter
11
thymus
10
adipose tissue
10
artery
10
penis
9
eye
8
gonad
8
lymph node
8
spinal cord
7
esophagus
6
spleen
5
lymphoid tissue
5
vein
4
mouth
4
nerve
4
ovary
4
testis
4
thyroid gland
4
uterus
3
skeleton
2
bone marrow
2
breast
2
bronchus
2
lymphatic vessel
2
tongue
2
urinary bladder
2
vagina
1
nose
Life stage
2
newborn
Date released
2
January, 2020
2
September, 2022
1
August, 2017
Software used
5
chromhmm
Lab
4
AMP-T2D consortium
1
Stephen Parker, UMich
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR660JUZ
released
Annotation file set
: Chromatin states for BSS00298 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR550HDB
released
Annotation file set
: Chromatin states for BSS00296 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR214PMG
released
Annotation file set
: ChromHMM 18-state model for endothelial cell of umbilical vein from ENCODE ChIP-seq data. ROADMAP HUVEC Umbilical Vein Endothelial Primary Cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR772SPX
released
Annotation file set
: ChromHMM 15-state model for endothelial cell of umbilical vein from ENCODE ChIP-seq data. ROADMAP HUVEC Umbilical Vein Endothelial Primary Cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR000759
released
Annotation file set
: ChromHMM 13-state model for endothelial cell of umbilical vein
Lab:
Stephen Parker, UMich
Project:
AMP