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Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
3
caQTL
3
target gene predictions
2
gene expression
2
histone modifications
1
binding sites
Annotation Category
3
Genetic variant effects
Annotation type Category
2
ATAC-seq
1
snATAC-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
2
CD4-positive helper T cell
2
endothelial cell
1
coronary artery
1
fibroblast of the aortic adventitia
1
liver
1
macrophage
1
mesenchymal stem cell
1
smooth muscle cell
1
smooth muscle cell of the coronary artery
1
type I muscle cell
1
type II muscle cell
Organ
1
artery
1
blood vessel
1
heart
1
vasculature
Date released
2
October, 2022
1
February, 2023
Software used
2
matrix-eQTL
1
rasqual
Lab
2
Stephen S. Rich Lab @UVA
1
AMP-T2D consortium
Project
2
T1D
1
AMP
RFA
2
T1D
1
AMP
Showing 3 of 3 results
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FileSet
DSR702NJX
released
Annotation file set
: Chromatin accessibility QTLs in smooth muscle cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR077VUE
released
Annotation file set
: full cis-caQTL stats for 10 T1D-associated regions
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR578KNM
released
Annotation file set
: nominally significant results from cis-caQTL scan
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D