Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
901
chromatin state
682
gene expression
167
differential activity
161
eQTL
74
Fine-mapped variants
16
variant allelic effects
10
accessible chromatin
4
sQTL
2
hQTL
2
variant to gene
1
histone modifications
1
meQTL
1
other
1
pQTL
1
representative DNase hypersensitivity sites
0
candidate regulatory elements
Annotation Category
4
Genetic variant effects
Annotation type Category
4
RNA-seq
Available data
bed bed3+
File set status
4
released
Genome assembly (visualization)
2
hg19
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
tissue
Biosample term
1
islet of Langerhans
1
monocyte
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
neutrophil
Organ
1
pancreas
Life stage
3
adult
Date released
3
May, 2021
1
March, 2023
Software used
3
limix
3
sqtlseeker
1
qTLtools
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
mesenchymal stem cell
files.file_type!
bed bed3+
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
FileSet
DSR615JGJ
released
Annotation file set
: Lead variant-to-phenotype associations identified using permutations. Contains data for all phenotypes (eGene/Junction) with an sQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR631VBI
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (naive CD4+ T cells) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661WZX
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD16+ neutrophils) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337BHM
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP