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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
chromatin state
1
histone modifications
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
cell line
Biosample term
40
stomach
37
heart
33
lung
33
muscle of arm
29
brain
29
kidney
29
small intestine
28
adrenal gland
28
muscle of back
27
large intestine
27
muscle of leg
26
left lung
26
placenta
22
right lung
21
A549
20
common myeloid progenitor, CD34-positive
20
renal cortex interstitium
20
right kidney
20
thymus
19
renal pelvis
18
left kidney
17
hematopoietic multipotent progenitor cell
15
spleen
14
spinal cord
13
liver
11
B cell
11
foreskin keratinocyte
11
heart left ventricle
10
sigmoid colon
9
MCF-7
9
trophoblast cell
8
body of pancreas
8
chorionic villus
8
gastrocnemius medialis
8
muscle of trunk
8
ovary
8
thyroid gland
8
transverse colon
7
H9
7
K562
7
Peyer's patch
7
adipose tissue
7
foreskin fibroblast
7
neurosphere
7
psoas muscle
7
testis
7
upper lobe of left lung
6
CD14-positive monocyte
6
CD8-positive, alpha-beta T cell
6
dermis blood vessel endothelial cell
6
endocrine pancreas
6
endothelial cell of umbilical vein
6
esophagus squamous epithelium
6
heart right ventricle
6
layer of hippocampus
6
left renal cortex interstitium
6
left renal pelvis
6
lower leg skin
6
natural killer cell
6
retina
6
right renal pelvis
6
tibial nerve
5
CD4-positive, alpha-beta T cell
5
CD8-positive, alpha-beta memory T cell
5
HeLa-S3
5
breast epithelium
5
caudate nucleus
5
esophagus muscularis mucosa
5
gastroesophageal sphincter
5
mononuclear cell
5
neural progenitor cell
5
omental fat pad
5
pancreas
5
parathyroid adenoma
5
right renal cortex interstitium
5
subcutaneous abdominal adipose tissue
5
substantia nigra
5
temporal lobe
4
SK-N-DZ
4
SK-N-SH
4
T-helper 1 cell
4
angular gyrus
4
aorta
4
ascending aorta
cardiac muscle cell
4
cingulate gyrus
4
colonic mucosa
4
duodenal mucosa
4
endodermal cell
4
esophagus
4
eye
4
fibroblast of breast
4
foreskin melanocyte
4
mesenchymal stem cell
4
mesodermal cell
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
peripheral blood mononuclear cell
4
prostate gland
4
skeletal muscle tissue
4
stomach smooth muscle
4
thoracic aorta
4
tongue
4
trophoblast
4
vagina
3
CD4-positive, alpha-beta memory T cell
3
HEK293
3
LNCaP clone FGC
3
MCF 10A
3
T cell
3
T-helper 2 cell
3
T47D
3
cerebellum
3
coronary artery
3
endometrium adenocarcinoma
3
fibroblast of lung
3
immortal human breast epithelial cell line cell
3
kidney tubule cell
3
limb
3
neural cell
3
regulatory T cell
3
right atrium auricular region
3
suprapubic skin
3
tibial artery
3
urinary bladder
3
uterus
2
A172
2
A673
2
ACC112
2
ACHN
2
AG10803
2
Ammon's horn
2
Brodmann (1909) area 46
2
C4-2B
2
CMK
2
Caki2
2
DND-41
2
DOHH2
2
Daoy
2
EH
2
EL
2
ELF-1
2
ELR
2
G401
2
GM04503
2
GM04504
2
GM12878
2
GM23248
2
GM23338
2
H4
2
H54
2
HAP-1
2
HCT116
2
HL-60
2
HS-27A
2
HS-5
2
HT-29
2
HT1080
2
HUES48
2
HUES6
2
HUES64
2
HepG2
2
IMR-90
2
KBM-7
2
KMS-11
2
LHCN-M2
2
LNCAP
2
Loucy
2
M059J
2
MG63
2
MM.1S
2
NAMALWA
2
NAMALWA cell
2
NB4
2
NCI-H929
2
OCI-LY1
2
OCI-LY3
2
OCI-LY7
2
PC-3
2
RCC 7860
2
RPMI7951
2
RPMI8226
2
RWPE1
2
RWPE2
2
SJCRH30
2
SJSA1
2
SK-MEL-5
2
SK-N-MC
2
SU-DHL-6
2
SW480
2
T-cell
2
UCSF-4
2
WERI-Rb-1
2
adipocyte
2
amnion
2
bipolar neuron
2
cardiac fibroblast
2
cardiac myoblast
Organ
2
lung
Life stage
2
embryonic
Date released
1
February, 2021
1
September, 2022
Software used
1
encode-ccres
1
r
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
biosample_term_name!
cardiac muscle cell
relevant_life_stage!
unknown
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR446ATU
released
Annotation file set
: Candidate regulatory elements for BSS00720 IMR-90 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR249FPB
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE IMR-90
Lab:
AMP-T2D consortium
Project:
AMP