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Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
2
binding sites
2
candidate regulatory elements
2
target gene predictions
1
chromatin state
1
eQTL
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
RNA-seq
Available data
2
bed bed3+
File set status
3
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
tissue
2
cell line
1
primary cell
Biosample term
1
Leydig cell
1
NT2-D1 cell
1
NT2/D1
Disease term
1
testicular embryonal carcinoma
Organ
90
epithelium
67
connective tissue
65
skin of body
47
bodily fluid
44
embryo
43
blood
43
lung
32
vasculature
30
brain
30
kidney
28
mammary gland
28
penis
23
prostate gland
21
blood vessel
21
bone element
21
lymph node
16
extraembryonic component
13
musculature of body
10
intestine
10
large intestine
8
eye
8
liver
6
heart
6
uterus
6
vein
4
artery
4
bronchus
4
lymphatic vessel
4
mouth
4
pancreas
3
gonad
3
placenta
3
testis
2
bone marrow
2
esophagus
2
limb
2
spinal cord
1
lymphoid tissue
1
nose
Life stage
2
unknown
Date released
1
February, 2021
1
January, 2022
1
September, 2022
Software used
1
encode-ccres
1
qTLtools
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_type!
tissue
Showing 3 of 3 results
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Download
FileSet
DSR464YWC
released
Annotation file set
: Candidate regulatory elements for BSS01386 NT2-D1 cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR212NXP
released
Annotation file set
: HLC eQTL of studay PhLiPS from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR260HPP
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE NT2/D1
Lab:
AMP-T2D consortium
Project:
AMP