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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
Fine-mapped variants
3
eQTL
2
accessible chromatin
2
candidate regulatory elements
1
chromatin state
1
gene expression
1
histone modifications
1
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
2
ChIP-seq
1
DNase-seq
Available data
1
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
86
monocyte
31
CD8-positive, alpha-beta T cell
24
heart
22
brain
20
neural progenitor cell
20
stomach
19
A549
19
kidney
17
muscle of arm
16
lung
16
placenta
15
muscle of leg
15
small intestine
14
adrenal gland
14
large intestine
13
common myeloid progenitor, CD34-positive
13
left lung
13
muscle of back
11
breast cancer cell
11
heart left ventricle
11
hematopoietic multipotent progenitor cell
11
liver
11
right kidney
11
right lung
11
thymus
10
B cell
10
renal cortex interstitium
10
renal pelvis
9
CD4-positive, alpha-beta memory T cell
9
gastric cancer cell
9
left kidney
8
K562
8
Rhabdomyosarcoma
8
adipocyte
8
fibroblast
8
hepatocyte
8
mature neutrophil
8
neuroblastoma cell
7
CD8-positive, alpha-beta memory T cell
7
HepG2
7
MCF-7
7
T cell
7
adipose tissue
7
diffuse intrinsic pontine glioma
7
embryonic stem cell
7
esophageal adenocarcinoma
7
keratinocyte
7
left cardiac atrium
7
spinal cord
6
B-lymphoblastoid cell line
6
Chondroid Chordoma
6
caudate nucleus
6
endothelial cell of umbilical vein
6
hESC cell
6
heart right ventricle
6
liposarcoma
6
mononuclear cell
6
neuroblastoma cell line
6
spleen
6
squamous cell lung carcinoma
6
temporal lobe
5
CD14-positive, CD16-negative classical monocyte
5
T-cell acute lymphoblastic leukemia
5
body of pancreas
5
cardiac muscle cell
5
coronary artery
5
fibroblast of cardiac tissue
5
foreskin keratinocyte
5
islet of Langerhans
5
layer of hippocampus
5
mammary gland epithelial cell
5
melanoma cell
5
natural killer cell
5
osteosarcoma
5
pancreas
5
retina
5
sigmoid colon
5
skeletal muscle myoblast
5
tibial artery
5
tibial nerve
5
trophoblast cell
4
CD14-positive monocyte
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
ascending aorta
4
bronchial epithelial cell
4
chorionic villus
4
colonic mucosa
4
endocrine pancreas
4
fibroblast of lung
4
foreskin fibroblast
4
gastrocnemius medialis
4
hepatic stellate cell
4
macrophage
4
mammary epithelial cell
4
mesenchymal stem cell
4
muscle of trunk
4
ovary
4
prostate gland
4
psoas muscle
4
regulatory T cell
4
rhabdomyosarcoma cell
4
right atrium auricular region
4
skeletal muscle tissue
4
testis
4
thoracic aorta
4
transverse colon
4
upper lobe of left lung
3
22Rv1
3
CD4-positive, alpha-beta T cell
3
Ewing sarcoma
3
GM12878
3
H1-hESC
3
HeLa-S3
3
KARPAS-422 cell
3
NAMALWA cell
3
Peyer's patch
3
SK-N-DZ
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
acute myeloid leukemia
3
cerebellum
3
chorion membrane
3
choroid plexus epithelial cell
3
cingulate gyrus
3
dermis lymphatic vessel endothelial cell
3
diffuse large B-cell lymphoma
3
duodenal mucosa
3
endodermal cell
3
endometrium adenocarcinoma
3
endothelial cell
3
enterocyte
3
epithelial cell of esophagus
3
epithelial cell of prostate
3
esophageal squamous cell carcinoma
3
fibroblast of dermis
3
frontal cortex
3
glioblastoma cell
3
glioma cell
3
globus pallidus
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
left renal cortex interstitium
3
left renal pelvis
3
lymphoblast
3
lymphoblastoid cell line
3
midbrain
3
mucosa of rectum
3
myofibroblast cell
3
naive T cell
3
neuronal stem cell
3
neurosphere
3
occipital lobe
3
osteoblast
3
pancreatic ductal adenocarcinoma
3
pancreatic ductal cell
3
putamen
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
skin fibroblast
3
smooth muscle cell
3
stomach smooth muscle
3
substantia nigra
3
superior temporal gyrus
3
thyroid gland
2
cardiac fibroblast
2
muscle of leg
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
B-lymphocyte
2
BE(2)-C
2
BJ cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
CMK
2
COLO205
2
Caco-2 cell
2
ESC derived cell line
2
EndoC_BH1
2
GM06990
2
GM12864
2
GM12865
2
GM12875
2
GM12891
2
GM12892
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
GM23248
2
H7-hESC
2
HAP-1
2
HEK293
2
HK-2 cell
Organ
3
brain
Life stage
2
adult
Date released
1
February, 2021
1
May, 2020
1
September, 2022
Software used
1
chromhmm
1
deltasvm
1
macs
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
Showing 3 of 3 results
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Download
FileSet
DSR420OXC
released
Annotation file set
: Chromatin states for BSS01469 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR510FWG
released
Annotation file set
: Histone modifications annotation for Neural Putamen from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR061VHE
released
Annotation file set
: Variant allelic effects of putamen ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP